| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474965
Identifier: 113474965
GI number: 113474965
Start: 1871194
End: 1871847
Strand: Direct
Name: 113474965
Synonym: Tery_1196
Alternate gene names: NA
Gene position: 1871194-1871847 (Clockwise)
Preceding gene: 113474964
Following gene: 113474966
Centisome position: 24.14
GC content: 34.86
Gene sequence:
>654_bases ATGAAAAATCAACAGCTAATTATTTTTACTCGTTATCCGGAACCAGGAACAACAAAAACACGGTTAATTCCTGTTTTGGG GGCTAAAGGTGCCGCAAACCTTCAGTTTCATATGACTGAGACAACTGTCATAAAAGCTAAGAAGTTATCTAATATGATGG CATTGTTAGTTGAAGTTAGATTTGCTGGTGGCAATTTACAGTTAATGAAAAATTGGTTAGGAGTGGAGCTTAATTTAAAA TATCAAAAACAGGGTACAGGTGATTTAGGTGAACGTATGGCAAGAGCTTTTGAATCTGCTTTTTATCAGGAGATGGAGTC TGTTGTAATTATTGGTACCGACTGCCCAAGCTTAACTGTGGATATTATGTTGGAAGCTTTTGCTAAATTAACTGAATATG ATGTGATCATTGGTCCGGCAACTGATGGGGGTTATTATTTAATTGGCCTCAAAAAAATTATTCCTGAGTTGTTTCAAGGA ATTAATTGGGGAACTTCTGAAGTATTGTCAAAAACTATGGCGATCGCTCAAAATCTTAATTTAGATATTCACTATTTACC TAAACTTTCTGATATTGACCGTCCAGAAGACCTGGAAAAATTACAATTTGAAATTCATCAGGACTTACGCAAAGATACTA TATATAGTACATAA
Upstream 100 bases:
>100_bases AATTGGCTTTATTAAGAATAAAGGAGAAACTAAACTGCCAAAACTTATCCAATTCCGGCGTGAGTAATTTTAGATAAGTT TAGTAGAAAACAATCTAAAA
Downstream 100 bases:
>100_bases TTTTGGTGATATTCACTATAGTTGTATAGGTTTATAGTCGCGACATTAAAACCTCTACTTTGTGGAGCGCAATTCCTTAG TTTTTTTTAAAAGCTCCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVRFAGGNLQLMKNWLGVELNLK YQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTVDIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQG INWGTSEVLSKTMAIAQNLNLDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST
Sequences:
>Translated_217_residues MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVRFAGGNLQLMKNWLGVELNLK YQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTVDIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQG INWGTSEVLSKTMAIAQNLNLDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST >Mature_217_residues MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVRFAGGNLQLMKNWLGVELNLK YQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTVDIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQG INWGTSEVLSKTMAIAQNLNLDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST
Specific function: Unknown
COG id: COG3222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24435; Mature: 24435
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVR CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH FAGGNLQLMKNWLGVELNLKYQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTV CCCCCHHEEHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH DIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQGINWGTSEVLSKTMAIAQNLN HHHHHHHHHHHHCEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC LDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVR CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH FAGGNLQLMKNWLGVELNLKYQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTV CCCCCHHEEHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH DIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQGINWGTSEVLSKTMAIAQNLN HHHHHHHHHHHHCEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC LDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA