Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474965

Identifier: 113474965

GI number: 113474965

Start: 1871194

End: 1871847

Strand: Direct

Name: 113474965

Synonym: Tery_1196

Alternate gene names: NA

Gene position: 1871194-1871847 (Clockwise)

Preceding gene: 113474964

Following gene: 113474966

Centisome position: 24.14

GC content: 34.86

Gene sequence:

>654_bases
ATGAAAAATCAACAGCTAATTATTTTTACTCGTTATCCGGAACCAGGAACAACAAAAACACGGTTAATTCCTGTTTTGGG
GGCTAAAGGTGCCGCAAACCTTCAGTTTCATATGACTGAGACAACTGTCATAAAAGCTAAGAAGTTATCTAATATGATGG
CATTGTTAGTTGAAGTTAGATTTGCTGGTGGCAATTTACAGTTAATGAAAAATTGGTTAGGAGTGGAGCTTAATTTAAAA
TATCAAAAACAGGGTACAGGTGATTTAGGTGAACGTATGGCAAGAGCTTTTGAATCTGCTTTTTATCAGGAGATGGAGTC
TGTTGTAATTATTGGTACCGACTGCCCAAGCTTAACTGTGGATATTATGTTGGAAGCTTTTGCTAAATTAACTGAATATG
ATGTGATCATTGGTCCGGCAACTGATGGGGGTTATTATTTAATTGGCCTCAAAAAAATTATTCCTGAGTTGTTTCAAGGA
ATTAATTGGGGAACTTCTGAAGTATTGTCAAAAACTATGGCGATCGCTCAAAATCTTAATTTAGATATTCACTATTTACC
TAAACTTTCTGATATTGACCGTCCAGAAGACCTGGAAAAATTACAATTTGAAATTCATCAGGACTTACGCAAAGATACTA
TATATAGTACATAA

Upstream 100 bases:

>100_bases
AATTGGCTTTATTAAGAATAAAGGAGAAACTAAACTGCCAAAACTTATCCAATTCCGGCGTGAGTAATTTTAGATAAGTT
TAGTAGAAAACAATCTAAAA

Downstream 100 bases:

>100_bases
TTTTGGTGATATTCACTATAGTTGTATAGGTTTATAGTCGCGACATTAAAACCTCTACTTTGTGGAGCGCAATTCCTTAG
TTTTTTTTAAAAGCTCCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVRFAGGNLQLMKNWLGVELNLK
YQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTVDIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQG
INWGTSEVLSKTMAIAQNLNLDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST

Sequences:

>Translated_217_residues
MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVRFAGGNLQLMKNWLGVELNLK
YQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTVDIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQG
INWGTSEVLSKTMAIAQNLNLDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST
>Mature_217_residues
MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVRFAGGNLQLMKNWLGVELNLK
YQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTVDIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQG
INWGTSEVLSKTMAIAQNLNLDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST

Specific function: Unknown

COG id: COG3222

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24435; Mature: 24435

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVR
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
FAGGNLQLMKNWLGVELNLKYQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTV
CCCCCHHEEHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
DIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQGINWGTSEVLSKTMAIAQNLN
HHHHHHHHHHHHCEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
LDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNQQLIIFTRYPEPGTTKTRLIPVLGAKGAANLQFHMTETTVIKAKKLSNMMALLVEVR
CCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
FAGGNLQLMKNWLGVELNLKYQKQGTGDLGERMARAFESAFYQEMESVVIIGTDCPSLTV
CCCCCHHEEHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
DIMLEAFAKLTEYDVIIGPATDGGYYLIGLKKIIPELFQGINWGTSEVLSKTMAIAQNLN
HHHHHHHHHHHHCEEEEECCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
LDIHYLPKLSDIDRPEDLEKLQFEIHQDLRKDTIYST
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA