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The map label for this gene is petB

Identifier: 113474911

GI number: 113474911

Start: 1792916

End: 1793584

Strand: Reverse

Name: petB

Synonym: Tery_1137

Alternate gene names: 113474911

Gene position: 1793584-1792916 (Counterclockwise)

Preceding gene: 113474913

Following gene: 113474910

Centisome position: 23.14

GC content: 41.11

Gene sequence:

>669_bases
ATGTTCTCAAAACAGGTAACTGATTCACCCGCTTATAAGTGGTTTGACGAACGCTTAGAAGTTCAAGCGCTCGCAGACGA
CATTTCTAGCAAATATGTTCCACCCCATGTAAATATTTTTTACTGCTTAGGTGGAATTACTCTGGTTTGCTTTTTGATCC
AGTTTGCTACTGGATTTGCTATGACTTTCTACTACAAGCCAACAGTAACAGAAGCATTAGCATCAGTCCAATACATTATG
ACTGAAGTTAACTTTGGTTGGCTCATTCGTTCCATCCACCGTTGGTCTGCCAGTATGATGGTGTTGATGATGATTCTTCA
TACTTTCCGGGTTTACCTCACAGGTGGCTTCAAAAAGCCTCGCGAATTAACCTGGGTAACAGGGGTAGTTATGGCTGTAA
TTACTGTTAGCTTTGGAGTAACTGGTTATTCCTTGCCTTGGGACCAAATTGGTTATTGGGCGGTAAAAATTGTGTCTGGT
GTACCTGATGCAATTCCATTTGTTGGTCCATTCATCGTAGAACTGATGCGTGGTAGTACAAGTGTTGGTCAAGCAACCCT
AACTCGTTTCTACAGTCTTCATACTTTTGTACTACCCTGGTTTATTGCAGTGTTTATGCTACTGCATTTCTTAATGATTC
GTAAGCAAGGTATTTCAGGACCTTTGTAA

Upstream 100 bases:

>100_bases
GTATAGCTGATTCAAAGGTTGATGTGAGTATCTTTTCCTAGCTACCCATAAACTGAATTTATTAATATTCCAGCAATATT
CATCTAGGATTTTTGGCTTC

Downstream 100 bases:

>100_bases
GTTAAGCTATCAATAATTAAATACTAGCTTTCAGTTGTTACGGAGAAAAAAAAGATTATGTCTACTTTAAAAAAGCCAGA
TCTCAGCGATCCTCAATTAA

Product: cytochrome b6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MFSKQVTDSPAYKWFDERLEVQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEALASVQYIM
TEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKPRELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAVKIVSG
VPDAIPFVGPFIVELMRGSTSVGQATLTRFYSLHTFVLPWFIAVFMLLHFLMIRKQGISGPL

Sequences:

>Translated_222_residues
MFSKQVTDSPAYKWFDERLEVQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEALASVQYIM
TEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKPRELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAVKIVSG
VPDAIPFVGPFIVELMRGSTSVGQATLTRFYSLHTFVLPWFIAVFMLLHFLMIRKQGISGPL
>Mature_222_residues
MFSKQVTDSPAYKWFDERLEVQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEALASVQYIM
TEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKPRELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAVKIVSG
VPDAIPFVGPFIVELMRGSTSVGQATLTRFYSLHTFVLPWFIAVFMLLHFLMIRKQGISGPL

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily

Homologues:

Organism=Homo sapiens, GI251831119, Length=189, Percent_Identity=32.8042328042328, Blast_Score=127, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6226532, Length=189, Percent_Identity=30.6878306878307, Blast_Score=114, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6226529, Length=189, Percent_Identity=30.6878306878307, Blast_Score=112, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6226531, Length=179, Percent_Identity=27.3743016759777, Blast_Score=89, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6226530, Length=121, Percent_Identity=28.099173553719, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYB6_TRIEI (Q116S5)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720972.1
- ProteinModelPortal:   Q116S5
- SMR:   Q116S5
- STRING:   Q116S5
- GeneID:   4244407
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1137
- NMPDR:   fig|203124.1.peg.3454
- eggNOG:   COG1290
- HOGENOM:   HBG286086
- OMA:   ATLTRFY
- ProtClustDB:   PRK03735
- BioCyc:   TERY203124:TERY_1137-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_00633
- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174
- Gene3D:   G3DSA:1.20.810.10
- PANTHER:   PTHR19271

Pfam domain/function: PF00033 Cytochrom_B_N; SSF81342 Transmembr_di-haem_cytochrome

EC number: NA

Molecular weight: Translated: 25186; Mature: 25186

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS51002 CYTB_NTER

Important sites: BINDING 42-42

Signals:

None

Transmembrane regions:

HASH(0x149209b0)-; HASH(0x16d3f7d8)-; HASH(0x169f438c)-; HASH(0x15425ef8)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKQVTDSPAYKWFDERLEVQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MTFYYKPTVTEALASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKP
EEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAVKIVSGVPDAIPFVGPFIVELMRGST
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
SVGQATLTRFYSLHTFVLPWFIAVFMLLHFLMIRKQGISGPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MFSKQVTDSPAYKWFDERLEVQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
MTFYYKPTVTEALASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKP
EEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAVKIVSGVPDAIPFVGPFIVELMRGST
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
SVGQATLTRFYSLHTFVLPWFIAVFMLLHFLMIRKQGISGPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA