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The map label for this gene is petD

Identifier: 113474910

GI number: 113474910

Start: 1792376

End: 1792858

Strand: Reverse

Name: petD

Synonym: Tery_1136

Alternate gene names: 113474910

Gene position: 1792858-1792376 (Counterclockwise)

Preceding gene: 113474911

Following gene: 113474909

Centisome position: 23.13

GC content: 38.51

Gene sequence:

>483_bases
ATGTCTACTTTAAAAAAGCCAGATCTCAGCGATCCTCAATTAAGAGCTAAGTTAGCTAAAGGTATGGGTCACAACTACTA
TGGTGAACCTGCTTGGCCTAACGATTTGCTCTATATATTCCCAGTAGTAATTGTAGGTACAATTGCTTTATGCGTAGGTT
TAGCTGTACTAGATCCTGCTATGATTGGTGAGCCAGCAGATCCATTTGCTACTCCTCTAGAAATTTTGCCTGAGTGGTAT
TTCTGGCCAGTTTTTCAAATTCTACGTGTTGTACCTAATAAACTGTTAGGTATTGTGGCCATGGCTTCTATTCCTTTAGG
ATTAATGTTGGTTCCTTTCATTGAAAGTGTCAATAAGTTCCAAAATCCTTTTCGTCGCCCTGTAGCTACTGCTGTATTTC
TATTTGGTACTGCAGTTACTCTATGGTTAGGTATTGGTGCTACTTTACCAATTGATAAATCCTTGACTTTTGGTCTATTC
TAA

Upstream 100 bases:

>100_bases
TTTCTTAATGATTCGTAAGCAAGGTATTTCAGGACCTTTGTAAGTTAAGCTATCAATAATTAAATACTAGCTTTCAGTTG
TTACGGAGAAAAAAAAGATT

Downstream 100 bases:

>100_bases
GACTTGGATTTATAAAATTTTTCCCCCTTTGTGGATTTTCAATCATAACTACAATAACTACATTTGTGTTTGTAGAGATT
ATTGACTAGGGGTTGATATT

Product: cytochrome b6-f complex subunit IV

Products: NA

Alternate protein names: 17 kDa polypeptide

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSTLKKPDLSDPQLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIVGTIALCVGLAVLDPAMIGEPADPFATPLEILPEWY
FWPVFQILRVVPNKLLGIVAMASIPLGLMLVPFIESVNKFQNPFRRPVATAVFLFGTAVTLWLGIGATLPIDKSLTFGLF

Sequences:

>Translated_160_residues
MSTLKKPDLSDPQLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIVGTIALCVGLAVLDPAMIGEPADPFATPLEILPEWY
FWPVFQILRVVPNKLLGIVAMASIPLGLMLVPFIESVNKFQNPFRRPVATAVFLFGTAVTLWLGIGATLPIDKSLTFGLF
>Mature_159_residues
STLKKPDLSDPQLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIVGTIALCVGLAVLDPAMIGEPADPFATPLEILPEWYF
WPVFQILRVVPNKLLGIVAMASIPLGLMLVPFIESVNKFQNPFRRPVATAVFLFGTAVTLWLGIGATLPIDKSLTFGLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PETD_TRIEI (Q116S6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720971.1
- ProteinModelPortal:   Q116S6
- SMR:   Q116S6
- STRING:   Q116S6
- GeneID:   4244406
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1136
- NMPDR:   fig|203124.1.peg.3453
- eggNOG:   COG1290
- HOGENOM:   HBG286085
- OMA:   PFIESVN
- ProtClustDB:   PRK13476
- BioCyc:   TERY203124:TERY_1136-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01344
- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870
- Gene3D:   G3DSA:1.20.810.10
- PANTHER:   PTHR19271
- PIRSF:   PIRSF000033
- TIGRFAMs:   TIGR01156

Pfam domain/function: PF00032 Cytochrom_B_C; SSF81648 Cytochrome_b/b6_C

EC number: NA

Molecular weight: Translated: 17554; Mature: 17423

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1613ba7c)-; HASH(0x16a89e28)-; HASH(0x15987338)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLKKPDLSDPQLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIVGTIALCVGLAVLDPA
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MIGEPADPFATPLEILPEWYFWPVFQILRVVPNKLLGIVAMASIPLGLMLVPFIESVNKF
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNPFRRPVATAVFLFGTAVTLWLGIGATLPIDKSLTFGLF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
STLKKPDLSDPQLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVIVGTIALCVGLAVLDPA
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MIGEPADPFATPLEILPEWYFWPVFQILRVVPNKLLGIVAMASIPLGLMLVPFIESVNKF
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QNPFRRPVATAVFLFGTAVTLWLGIGATLPIDKSLTFGLF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA