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The map label for this gene is yddE [C]

Identifier: 113474856

GI number: 113474856

Start: 1690505

End: 1691377

Strand: Direct

Name: yddE [C]

Synonym: Tery_1075

Alternate gene names: 113474856

Gene position: 1690505-1691377 (Clockwise)

Preceding gene: 113474855

Following gene: 113474860

Centisome position: 21.81

GC content: 33.68

Gene sequence:

>873_bases
ATGGATTTTTATATTGTAGATGTATTTGCTGAAACTAAATATTCTGGTAATCAATTAGCTGTATTTACTGGCGCTGAAGT
AGCTAATCTTTCTGATGAGAAAATGTTACAAATTGCTAGAGAAATGAATTATTCAGAAACTACTTTTCTTCTCTCTTCTG
AACAACAAAATGGTGGTTACGATGTGCGAATATTTACCCCGACTAAAGAATTACCTTTTGCCGGGCATCCAACTTTAGGA
ACTGCTTATATTATTCAGCGAAAAATTATTAAAAGTCTGGTAGAACAAGTAGTTTTAAATCTGGGTGTAGGGCAAATTCC
TGTGAGTTGGAAAGGTGAAGTTTTATGGATGAGCCAGAATGTTCCGACTTTTGCTCAAAAACATCAAGTTGAAACTGTGG
CAGAGGTATTAAATTTAGAAGTAGTTGATATTGATACTAGATTTCCTATTCAGGAAGTTTCGACAGGGATACCTTTTATA
ATTGTACCTTTGAAAAGTCTGGTGGCATTGAAAAAAGCTAAGGTTAATTTGGATAAATATTATCAATTTATTCAAACAAC
AAAGGTAACAGAAATTTTGATATTTTGCCCAGAGACATACAAAGATATTGATGATTTAAGCGTGAGAATGTTTGCTCCCT
ATTTAGGAATTACTGAAGACCCGGCAACAGGTAGTGCTAATGGTTGTCTAGCAGGATATTTAGCTGAGTATAATTATTTT
AATCAGAGGAAAATTGATATTAGAGTAGAACAAGGATATGAAATTAATCGACCATCTTTATTATTGTTACAGGCTGAGAA
AAAAGCCGGCAAAATCGAAGTATTTGTGGGTGGAAATGTTGTGATGATTGCTCAAGGAAAATTTGTTGCTTGA

Upstream 100 bases:

>100_bases
TTCTATCCCAATCTCCTTTTTTTCAAGATTTACTTGCTCCTTTGCTCTGAGGGAGGTCTGTTGTATGCAAACTCCCTACT
ATTTGGTATAATAAAGTGTT

Downstream 100 bases:

>100_bases
AACAGGAAGCAATGAGACTGATTTTCAAAATGGATGTGATGATATTTATCAAGAAAAACAAATAAAAGAAAAGATAAAAA
ATAGAATGTAAATTAAATAT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDFYIVDVFAETKYSGNQLAVFTGAEVANLSDEKMLQIAREMNYSETTFLLSSEQQNGGYDVRIFTPTKELPFAGHPTLG
TAYIIQRKIIKSLVEQVVLNLGVGQIPVSWKGEVLWMSQNVPTFAQKHQVETVAEVLNLEVVDIDTRFPIQEVSTGIPFI
IVPLKSLVALKKAKVNLDKYYQFIQTTKVTEILIFCPETYKDIDDLSVRMFAPYLGITEDPATGSANGCLAGYLAEYNYF
NQRKIDIRVEQGYEINRPSLLLLQAEKKAGKIEVFVGGNVVMIAQGKFVA

Sequences:

>Translated_290_residues
MDFYIVDVFAETKYSGNQLAVFTGAEVANLSDEKMLQIAREMNYSETTFLLSSEQQNGGYDVRIFTPTKELPFAGHPTLG
TAYIIQRKIIKSLVEQVVLNLGVGQIPVSWKGEVLWMSQNVPTFAQKHQVETVAEVLNLEVVDIDTRFPIQEVSTGIPFI
IVPLKSLVALKKAKVNLDKYYQFIQTTKVTEILIFCPETYKDIDDLSVRMFAPYLGITEDPATGSANGCLAGYLAEYNYF
NQRKIDIRVEQGYEINRPSLLLLQAEKKAGKIEVFVGGNVVMIAQGKFVA
>Mature_290_residues
MDFYIVDVFAETKYSGNQLAVFTGAEVANLSDEKMLQIAREMNYSETTFLLSSEQQNGGYDVRIFTPTKELPFAGHPTLG
TAYIIQRKIIKSLVEQVVLNLGVGQIPVSWKGEVLWMSQNVPTFAQKHQVETVAEVLNLEVVDIDTRFPIQEVSTGIPFI
IVPLKSLVALKKAKVNLDKYYQFIQTTKVTEILIFCPETYKDIDDLSVRMFAPYLGITEDPATGSANGCLAGYLAEYNYF
NQRKIDIRVEQGYEINRPSLLLLQAEKKAGKIEVFVGGNVVMIAQGKFVA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=304, Percent_Identity=29.2763157894737, Blast_Score=110, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=26.4604810996564, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32469; Mature: 32469

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFYIVDVFAETKYSGNQLAVFTGAEVANLSDEKMLQIAREMNYSETTFLLSSEQQNGGY
CCEEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCE
DVRIFTPTKELPFAGHPTLGTAYIIQRKIIKSLVEQVVLNLGVGQIPVSWKGEVLWMSQN
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
VPTFAQKHQVETVAEVLNLEVVDIDTRFPIQEVSTGIPFIIVPLKSLVALKKAKVNLDKY
CCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHCCCCEEEECHHHHHHHHHHHCCHHHH
YQFIQTTKVTEILIFCPETYKDIDDLSVRMFAPYLGITEDPATGSANGCLAGYLAEYNYF
HHHHHHCCEEEEEEECCHHHCCHHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC
NQRKIDIRVEQGYEINRPSLLLLQAEKKAGKIEVFVGGNVVMIAQGKFVA
CCEEEEEEEECCEECCCCEEEEEEECCCCCEEEEEECCCEEEEECCCCCC
>Mature Secondary Structure
MDFYIVDVFAETKYSGNQLAVFTGAEVANLSDEKMLQIAREMNYSETTFLLSSEQQNGGY
CCEEEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCE
DVRIFTPTKELPFAGHPTLGTAYIIQRKIIKSLVEQVVLNLGVGQIPVSWKGEVLWMSQN
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
VPTFAQKHQVETVAEVLNLEVVDIDTRFPIQEVSTGIPFIIVPLKSLVALKKAKVNLDKY
CCHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHCCCCEEEECHHHHHHHHHHHCCHHHH
YQFIQTTKVTEILIFCPETYKDIDDLSVRMFAPYLGITEDPATGSANGCLAGYLAEYNYF
HHHHHHCCEEEEEEECCHHHCCHHHCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC
NQRKIDIRVEQGYEINRPSLLLLQAEKKAGKIEVFVGGNVVMIAQGKFVA
CCEEEEEEEECCEECCCCEEEEEEECCCCCEEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]