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The map label for this gene is comF [H]

Identifier: 113474722

GI number: 113474722

Start: 1441709

End: 1442476

Strand: Direct

Name: comF [H]

Synonym: Tery_0911

Alternate gene names: 113474722

Gene position: 1441709-1442476 (Clockwise)

Preceding gene: 113474720

Following gene: 113474723

Centisome position: 18.6

GC content: 38.28

Gene sequence:

>768_bases
ATGATTAAATTTATCCGGAGAAAAATTTTTAAACCATTTTTGAATATACTTCTTAAAGCTAACTGTCCTCTTTGTCAGCG
TTCAGCAGACAGAGAGTTTTGTCAGTATTGCGAAAAACAAGTTTGGCACTGTCAGTTTCCTGGTGGAGGAGAAATATTTT
CTGGAGAAGTACCTATATTTGTTTGGGGTCAATATAAAGATAGTCTCAAACGAGCGATCGCTGCCATGAAATATGAAGAT
CACCCAGAAATAGCAAAACCCCTGGGATATTGGTTGGCGGATGGATGGTTAGCTACAGCACCCCGTGAAAAAGCGGTGGT
TATACCCATTCCTATGCACAAAAAAAAGCAGAGGGAACGAGGTTTTAATCAATCTGAACTATTGGCCAATAGTTTTTGTG
AGGCGACAGGTTTACAGATATGGCGAAATGCTTTGGTAAAACTGAAACAGACTCAGCCATTATATAATTTGTCTTCTCAG
GAGAGGCTAGAGATGGTAAAGGATATTTTTGCGATAGGCAAAGATTTCCGTAATCGGAGTTCCTATGCTCCAGTTTTACT
GGTGGATGATATTTATACAACTGGTGCAACGGTGAATTCTGCTATAGAGGTTTTGCGTAAAGCTGGTATTAAAGTCGTGG
GAGTATTGGCGATCGCGACTACAAAAGAACCTACTGCGAAGAAACCACTATTAAAAAGTAAAAAAGTTGTGAAAAAAATC
TACTTCTCAAAAGTAGAAATGAAACTCAAAAATATAGTAAGTCAGTAA

Upstream 100 bases:

>100_bases
TTCATTCCCTTAAAATGGATATCTGATAGCTGATGGCTGAATGCTTATTATTAACATAAAATAATATTAGAAATATTATA
TCTTTTCAAGGTTCTTGACA

Downstream 100 bases:

>100_bases
CAGTTTTTTGTGATACTACTTATTCCGAGTAAGTAGGTAGGCGTGAAAAAACTTAGCTATATTAAGATTTATGTACTGAC
TTCAAGCTCTTCCACACAAT

Product: hypothetical protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIKFIRRKIFKPFLNILLKANCPLCQRSADREFCQYCEKQVWHCQFPGGGEIFSGEVPIFVWGQYKDSLKRAIAAMKYED
HPEIAKPLGYWLADGWLATAPREKAVVIPIPMHKKKQRERGFNQSELLANSFCEATGLQIWRNALVKLKQTQPLYNLSSQ
ERLEMVKDIFAIGKDFRNRSSYAPVLLVDDIYTTGATVNSAIEVLRKAGIKVVGVLAIATTKEPTAKKPLLKSKKVVKKI
YFSKVEMKLKNIVSQ

Sequences:

>Translated_255_residues
MIKFIRRKIFKPFLNILLKANCPLCQRSADREFCQYCEKQVWHCQFPGGGEIFSGEVPIFVWGQYKDSLKRAIAAMKYED
HPEIAKPLGYWLADGWLATAPREKAVVIPIPMHKKKQRERGFNQSELLANSFCEATGLQIWRNALVKLKQTQPLYNLSSQ
ERLEMVKDIFAIGKDFRNRSSYAPVLLVDDIYTTGATVNSAIEVLRKAGIKVVGVLAIATTKEPTAKKPLLKSKKVVKKI
YFSKVEMKLKNIVSQ
>Mature_255_residues
MIKFIRRKIFKPFLNILLKANCPLCQRSADREFCQYCEKQVWHCQFPGGGEIFSGEVPIFVWGQYKDSLKRAIAAMKYED
HPEIAKPLGYWLADGWLATAPREKAVVIPIPMHKKKQRERGFNQSELLANSFCEATGLQIWRNALVKLKQTQPLYNLSSQ
ERLEMVKDIFAIGKDFRNRSSYAPVLLVDDIYTTGATVNSAIEVLRKAGIKVVGVLAIATTKEPTAKKPLLKSKKVVKKI
YFSKVEMKLKNIVSQ

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 29081; Mature: 29081

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFIRRKIFKPFLNILLKANCPLCQRSADREFCQYCEKQVWHCQFPGGGEIFSGEVPIF
CHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCEEEECCCCCCEECCCCCEE
VWGQYKDSLKRAIAAMKYEDHPEIAKPLGYWLADGWLATAPREKAVVIPIPMHKKKQRER
EECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEECCCCCCEEEEECCCCHHHHHHC
GFNQSELLANSFCEATGLQIWRNALVKLKQTQPLYNLSSQERLEMVKDIFAIGKDFRNRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
SYAPVLLVDDIYTTGATVNSAIEVLRKAGIKVVGVLAIATTKEPTAKKPLLKSKKVVKKI
CCCCEEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
YFSKVEMKLKNIVSQ
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKFIRRKIFKPFLNILLKANCPLCQRSADREFCQYCEKQVWHCQFPGGGEIFSGEVPIF
CHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHCEEEECCCCCCEECCCCCEE
VWGQYKDSLKRAIAAMKYEDHPEIAKPLGYWLADGWLATAPREKAVVIPIPMHKKKQRER
EECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEECCCCCCEEEEECCCCHHHHHHC
GFNQSELLANSFCEATGLQIWRNALVKLKQTQPLYNLSSQERLEMVKDIFAIGKDFRNRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
SYAPVLLVDDIYTTGATVNSAIEVLRKAGIKVVGVLAIATTKEPTAKKPLLKSKKVVKKI
CCCCEEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
YFSKVEMKLKNIVSQ
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]