| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474723
Identifier: 113474723
GI number: 113474723
Start: 1443313
End: 1444083
Strand: Direct
Name: 113474723
Synonym: Tery_0912
Alternate gene names: NA
Gene position: 1443313-1444083 (Clockwise)
Preceding gene: 113474722
Following gene: 113474725
Centisome position: 18.62
GC content: 34.89
Gene sequence:
>771_bases ATGGAATGGCAAGAAAATTCTGGTAATTGGGTATTAATACCCTCTCGTCCCAAAGCAATCATACATTTTTTGGGTGGAGC ATTTGTTGCAACAGCACCCCATGTTACTTATCGGTGTTTACTAGAGATTCTAGCAAATCAAGGCTATGCAGTAATAGCTA CTCCTTTTATCAATACTTTAGACCATTTAGCAATAGCTAACAACGTTCTCAGTAGTTTTGAGAATTGCCTAAATCACTTA TATACTAGTGAAATACTCAGGAAAAAATCTTTACCTATCTATGGAATTGGGCATAGTATGGGATGTAAGTTACATTTACT CATGGGCAGTTTAAACTCTATAGCAAGAGCTGGTAATATTCTCATATCTTTCAACAATTTTGGAGCTCGTAATGCTATTC CCATGGTCGAACAAATATCTTCTGTAGTGAAAGTAGAGTTTACTCCATCCCCAAAAATTACAAACAGCATAATTCAAAAG CGTTATCAAATTCGGCGCAATTTATTGATTAAATTTAATAATGATAATATAGATCAAACTCTTCGTTTGAGCGATATATT ACGACTACGTTTTCCCAGCATGGTAACAGTTCAGAGATTAAATGGAAATCATTTAACGCCCTTAGGTCAAGATTTAAGTT GGTCTGTAGGACAAGTATATACTCCTGTAGATGCTATTGGTCAATGGCTGAAACAAGAGATTTATAAAGACTTCAATAAA CTTCAACGTGAAATCCTACTTTGGTTAAATCCACTAGCACCAATATCATAG
Upstream 100 bases:
>100_bases AAAAATAAAATAATACTTCAACTGTATTAAAAGCATTTAATAATTTGGGCAACAACTAAATATCGTAATTGTCAATAAAA AACTTTTATAGTTTTAAATT
Downstream 100 bases:
>100_bases CTTGATCCTGATAAATTCTAAGTAATCGTATCACAATCGGAACAATTCTTTTGTTATAGGATATATGGCCAATATTGTTT GATTATTAACAAACAGTTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MEWQENSGNWVLIPSRPKAIIHFLGGAFVATAPHVTYRCLLEILANQGYAVIATPFINTLDHLAIANNVLSSFENCLNHL YTSEILRKKSLPIYGIGHSMGCKLHLLMGSLNSIARAGNILISFNNFGARNAIPMVEQISSVVKVEFTPSPKITNSIIQK RYQIRRNLLIKFNNDNIDQTLRLSDILRLRFPSMVTVQRLNGNHLTPLGQDLSWSVGQVYTPVDAIGQWLKQEIYKDFNK LQREILLWLNPLAPIS
Sequences:
>Translated_256_residues MEWQENSGNWVLIPSRPKAIIHFLGGAFVATAPHVTYRCLLEILANQGYAVIATPFINTLDHLAIANNVLSSFENCLNHL YTSEILRKKSLPIYGIGHSMGCKLHLLMGSLNSIARAGNILISFNNFGARNAIPMVEQISSVVKVEFTPSPKITNSIIQK RYQIRRNLLIKFNNDNIDQTLRLSDILRLRFPSMVTVQRLNGNHLTPLGQDLSWSVGQVYTPVDAIGQWLKQEIYKDFNK LQREILLWLNPLAPIS >Mature_256_residues MEWQENSGNWVLIPSRPKAIIHFLGGAFVATAPHVTYRCLLEILANQGYAVIATPFINTLDHLAIANNVLSSFENCLNHL YTSEILRKKSLPIYGIGHSMGCKLHLLMGSLNSIARAGNILISFNNFGARNAIPMVEQISSVVKVEFTPSPKITNSIIQK RYQIRRNLLIKFNNDNIDQTLRLSDILRLRFPSMVTVQRLNGNHLTPLGQDLSWSVGQVYTPVDAIGQWLKQEIYKDFNK LQREILLWLNPLAPIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28903; Mature: 28903
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEWQENSGNWVLIPSRPKAIIHFLGGAFVATAPHVTYRCLLEILANQGYAVIATPFINTL CCCCCCCCCEEEECCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCEEEECHHHHHH DHLAIANNVLSSFENCLNHLYTSEILRKKSLPIYGIGHSMGCKLHLLMGSLNSIARAGNI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEHHHHHHHHHHHCCCE LISFNNFGARNAIPMVEQISSVVKVEFTPSPKITNSIIQKRYQIRRNLLIKFNNDNIDQT EEEECCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCCCCCHH LRLSDILRLRFPSMVTVQRLNGNHLTPLGQDLSWSVGQVYTPVDAIGQWLKQEIYKDFNK HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHH LQREILLWLNPLAPIS HHHHHHHHHCCCCCCC >Mature Secondary Structure MEWQENSGNWVLIPSRPKAIIHFLGGAFVATAPHVTYRCLLEILANQGYAVIATPFINTL CCCCCCCCCEEEECCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCCCEEEECHHHHHH DHLAIANNVLSSFENCLNHLYTSEILRKKSLPIYGIGHSMGCKLHLLMGSLNSIARAGNI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEHHHHHHHHHHHCCCE LISFNNFGARNAIPMVEQISSVVKVEFTPSPKITNSIIQKRYQIRRNLLIKFNNDNIDQT EEEECCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCCCCCHH LRLSDILRLRFPSMVTVQRLNGNHLTPLGQDLSWSVGQVYTPVDAIGQWLKQEIYKDFNK HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHH LQREILLWLNPLAPIS HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA