BacMap

Definition	Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession	NC_008312
Length	7,750,108

Click here to switch to the map view.

The map label for this gene is fabG [H]

Identifier: 113474543

GI number: 113474543

Start: 1130508

End: 1131227

Strand: Direct

Name: fabG [H]

Synonym: Tery_0696

Alternate gene names: 113474543

Gene position: 1130508-1131227 (Clockwise)

Preceding gene: 113474541

Following gene: 113474544

Centisome position: 14.59

GC content: 40.56

Gene sequence:

>720_bases
ATGATTAAAAAAGCACTTGTAACGGGTTCAGCAGTTGGAATAGGTAGGGCGATCGCTCTCGACTTAGCTAGGAAAGGATT
TGATGTAGCATTTCACTATAACCGAAGTGCAGAAGCAGCCAACCAAGGAAGTCAAGAAGCAGCTACCTACGGAGTCAAGT
CTATTGCTCTACAAGCAGATGTTACTAAACCAGAGCAAGCTAAATCTTTAGTAGAAAATGCAGCCGAAAAACTCGGAGGG
TTATCTGTTGTAGTTAATAATGTGGGAAACTTTCTGGAAAAAACAACTAGTCAAATATCCATAGAAGAATGGGATGAAAT
GCTTGATTCAAATTTAAATTCCACTTTCTATGTCACTCAAACAACAATTCCTTACCTCAAGGCAGCAGGTTGGGGACGTA
TTGTCAACTTCAGTTTCGCAAGTGCCCAACATCTAAAAGCAGATGACCAACAAACAGCCTATAGAATTGCCAAAACTGGT
ATAATCATCTATAGTAAGTCCCTAGCTCAAGAATTAGTTAAGGATAAAATTACAGTAAATGTAGTTGCCCCAGGAGCAGC
AGAAAATACTATTGGTCTGGAGGAAACTATTCCTCTGCTCCCAACTAAGCGACCTGCAACTTTGAAAGAAGTAACTCATG
CAGTTGCTTTTTTTGTCAGTCCTGAGTCAGATTACATTACTGGGCAAGTTCTGGAAGTAGCAGGGGGTTACAGGTTGTAG

Upstream 100 bases:

>100_bases
CGCTAAAATGTATAAGTTATGTTTTTTGTAGGGGCTAACAACAGAAGTTAAAAAGTTTGTGTGTAAGTTCTGTGATGATT
AAATTTAATTCTCAAAGACA

Downstream 100 bases:

>100_bases
CAATACTTAGCTATTTTCCTTGACAAAGATTGGGAATTTTAGCCGACTGAAAATTGTTATTGATTAAATAAAGGAGTTCA
AAAATGCTTACTCTCGCAGA

Product: dihydropteridine reductase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIKKALVTGSAVGIGRAIALDLARKGFDVAFHYNRSAEAANQGSQEAATYGVKSIALQADVTKPEQAKSLVENAAEKLGG
LSVVVNNVGNFLEKTTSQISIEEWDEMLDSNLNSTFYVTQTTIPYLKAAGWGRIVNFSFASAQHLKADDQQTAYRIAKTG
IIIYSKSLAQELVKDKITVNVVAPGAAENTIGLEETIPLLPTKRPATLKEVTHAVAFFVSPESDYITGQVLEVAGGYRL

Sequences:

>Translated_239_residues
MIKKALVTGSAVGIGRAIALDLARKGFDVAFHYNRSAEAANQGSQEAATYGVKSIALQADVTKPEQAKSLVENAAEKLGG
LSVVVNNVGNFLEKTTSQISIEEWDEMLDSNLNSTFYVTQTTIPYLKAAGWGRIVNFSFASAQHLKADDQQTAYRIAKTG
IIIYSKSLAQELVKDKITVNVVAPGAAENTIGLEETIPLLPTKRPATLKEVTHAVAFFVSPESDYITGQVLEVAGGYRL
>Mature_239_residues
MIKKALVTGSAVGIGRAIALDLARKGFDVAFHYNRSAEAANQGSQEAATYGVKSIALQADVTKPEQAKSLVENAAEKLGG
LSVVVNNVGNFLEKTTSQISIEEWDEMLDSNLNSTFYVTQTTIPYLKAAGWGRIVNFSFASAQHLKADDQQTAYRIAKTG
IIIYSKSLAQELVKDKITVNVVAPGAAENTIGLEETIPLLPTKRPATLKEVTHAVAFFVSPESDYITGQVLEVAGGYRL

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=32.9268292682927, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=31.3953488372093, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=32.4, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=30.2904564315353, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=29.0983606557377, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=29.2307692307692, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=28.0487804878049, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=26.1224489795918, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=30.9782608695652, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI66933014, Length=210, Percent_Identity=27.1428571428571, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI59889578, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=26.7206477732794, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=34.2857142857143, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=31.4516129032258, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.4552845528455, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=30.3501945525292, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=31.0483870967742, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=29.9180327868852, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=27.1604938271605, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=26.5060240963855, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=27.6859504132231, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=25.1937984496124, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=23.2365145228216, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=31.7073170731707, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=32.258064516129, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=32.824427480916, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=29.1497975708502, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=28.2258064516129, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=27.5590551181102, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=29.811320754717, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=29.8850574712644, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=28, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=30.4182509505703, Blast_Score=80, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=27.4809160305344, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=245, Percent_Identity=28.9795918367347, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=27.2030651340996, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=29.6992481203008, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=28.6792452830189, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=27.4809160305344, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=27.0992366412214, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=28.6259541984733, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=28.7878787878788, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17558006, Length=211, Percent_Identity=27.9620853080569, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=27.8625954198473, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=27.4809160305344, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=25.0950570342205, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=261, Percent_Identity=28.3524904214559, Blast_Score=67, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=244, Percent_Identity=24.5901639344262, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=30.5220883534137, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=30.5220883534137, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=29.0322580645161, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=30.9236947791165, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=29.9595141700405, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21357673, Length=246, Percent_Identity=28.8617886178862, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI18859837, Length=239, Percent_Identity=28.0334728033473, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=27.4193548387097, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=31.0204081632653, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24649181, Length=208, Percent_Identity=27.8846153846154, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 25679; Mature: 25679

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKALVTGSAVGIGRAIALDLARKGFDVAFHYNRSAEAANQGSQEAATYGVKSIALQAD
CCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHEEEEEC
VTKPEQAKSLVENAAEKLGGLSVVVNNVGNFLEKTTSQISIEEWDEMLDSNLNSTFYVTQ
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEE
TTIPYLKAAGWGRIVNFSFASAQHLKADDQQTAYRIAKTGIIIYSKSLAQELVKDKITVN
CCCCHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCEEEE
VVAPGAAENTIGLEETIPLLPTKRPATLKEVTHAVAFFVSPESDYITGQVLEVAGGYRL
EECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHEECCCCCC
>Mature Secondary Structure
MIKKALVTGSAVGIGRAIALDLARKGFDVAFHYNRSAEAANQGSQEAATYGVKSIALQAD
CCCCCEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCHHHHHHHHHHEEEEEC
VTKPEQAKSLVENAAEKLGGLSVVVNNVGNFLEKTTSQISIEEWDEMLDSNLNSTFYVTQ
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEE
TTIPYLKAAGWGRIVNFSFASAQHLKADDQQTAYRIAKTGIIIYSKSLAQELVKDKITVN
CCCCHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHCCEEEEEHHHHHHHHHCCEEEE
VVAPGAAENTIGLEETIPLLPTKRPATLKEVTHAVAFFVSPESDYITGQVLEVAGGYRL
EECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA