| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474503
Identifier: 113474503
GI number: 113474503
Start: 1064179
End: 1065519
Strand: Direct
Name: 113474503
Synonym: Tery_0652
Alternate gene names: NA
Gene position: 1064179-1065519 (Clockwise)
Preceding gene: 113474500
Following gene: 113474504
Centisome position: 13.73
GC content: 39.15
Gene sequence:
>1341_bases ATGAACAAAATAGCTTATTTTGAATGTCCCACTGGTATTGCAGGCGATATGTGTCTGGGTGCTTTAGTCCATGTTGGTGT TCCTCTAAACTATCTAATAGAAAAACTAAATCTGTTGGGTATTTCTCAAGAATATCAGTTAAGTGCTGAGAAAGTCCATC GTAATGGTTTAGTTGCTACAAAATTTCATGTTAGACTTATTCATGCAAATCCTGAAGACGGGGAACCTCTGACTTTTGAT CATCACCATGACCATCATCACACTCATAATTTAGAAAATAAATCTAGCACAAAAAAACATCATCATACTCATCACCGCCA TTTGCCAGAAATTGAAGCATTAATCAAAAAAGCAGGGTTGCCCCAACGTGCTGAAGATTGGAGTTTAAAAGTGTTTCGTA AGTTAGCAGAAGCAGAGGGGGCTGTACATGGTATTGCCCCAAAGCAAGTACATTTTCACGAAGTGGGGGCAACTGATGCA ATTATTGATATTGTAGGAACTTGTTTGGGGTTAGATTGGTTGGACATTGACTTACTGTATTGTTCACCTCTGCCTATTGG TGGAGGAACTGTTAAAGCAGCTCATGGTCGATTACCTGTACCTGTACCAGCAGTGCTCAAACTTTGGGAGTTGCATAATG TTCCGATTTATAGTAATGGTTTGGAAAAAGAATTGTGTACTCCTACAGGTAGCGCGATCGCTTGTACTTTTGCTAGTAGT TTTGGTCCACCACCGCCAATGTTTTTGGAACGAGTAGGTTTGGGAGCAGGTTCCCAGAATTTAGCTATTCCTAATATTCT TCGCTTATGGATCGGTGAAGGAAAAGCTAGTACTCAAAATTTTCAAATTACAAAATCTGATGCTCCCACTTCTCAAGATA TTCACCTAGAAACTGTGTCAGTGTTGGAAACTCAAATAGATGATTGTTCTCCTCAAACTATCGCTTATACTTTTGATGCT CTGTTTGCTGCGGGAGCCTTGGATGTTTTTAGTCAGCCTGTAACTATGAAGAAATCTCGTTTGGGAGTTTTACTAACTGT TATTTGTACACCAGAAAAGTTGTCTGCTTGTGAAGAAGTAATATTTCAAGAGACTACGACTTTGGGTATTCGTTGCTCTA TTCAACAACGGAGTATTTTGAAGCGAGAAATTCATCAGGTGCAAACAGAATATGGAGCCATCCGACTAAAAGTAGCAAAG AAGGGGGAGAAAATTGTGAATGTACAACCGGAATATGAAGATTGTGCTGCATTAGCTAGACAGGAAAATATGCCTTTGAT AGAAGTACATAAAATGGTATTGCAGAGTTGGCAATTGCACTACTCAGAAGGTTTGAAATAA
Upstream 100 bases:
>100_bases TAAGGATAAAGGCTCTCCTTATTATAAGAAGATTCTAGTATTTTTTTGCCTCCTAATTCAGTAGGAGTTACTCATAACTG ATAACTAAGTTCCCTAATTT
Downstream 100 bases:
>100_bases AATCCACCTGAGACCCTAGGGTTCCAGGTTAGAAGTAATAGTTAATCCCTGATTAGGTTTGAGGATTTATAAATTTCTGC GCCCTGTTTACATAGTCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MNKIAYFECPTGIAGDMCLGALVHVGVPLNYLIEKLNLLGISQEYQLSAEKVHRNGLVATKFHVRLIHANPEDGEPLTFD HHHDHHHTHNLENKSSTKKHHHTHHRHLPEIEALIKKAGLPQRAEDWSLKVFRKLAEAEGAVHGIAPKQVHFHEVGATDA IIDIVGTCLGLDWLDIDLLYCSPLPIGGGTVKAAHGRLPVPVPAVLKLWELHNVPIYSNGLEKELCTPTGSAIACTFASS FGPPPPMFLERVGLGAGSQNLAIPNILRLWIGEGKASTQNFQITKSDAPTSQDIHLETVSVLETQIDDCSPQTIAYTFDA LFAAGALDVFSQPVTMKKSRLGVLLTVICTPEKLSACEEVIFQETTTLGIRCSIQQRSILKREIHQVQTEYGAIRLKVAK KGEKIVNVQPEYEDCAALARQENMPLIEVHKMVLQSWQLHYSEGLK
Sequences:
>Translated_446_residues MNKIAYFECPTGIAGDMCLGALVHVGVPLNYLIEKLNLLGISQEYQLSAEKVHRNGLVATKFHVRLIHANPEDGEPLTFD HHHDHHHTHNLENKSSTKKHHHTHHRHLPEIEALIKKAGLPQRAEDWSLKVFRKLAEAEGAVHGIAPKQVHFHEVGATDA IIDIVGTCLGLDWLDIDLLYCSPLPIGGGTVKAAHGRLPVPVPAVLKLWELHNVPIYSNGLEKELCTPTGSAIACTFASS FGPPPPMFLERVGLGAGSQNLAIPNILRLWIGEGKASTQNFQITKSDAPTSQDIHLETVSVLETQIDDCSPQTIAYTFDA LFAAGALDVFSQPVTMKKSRLGVLLTVICTPEKLSACEEVIFQETTTLGIRCSIQQRSILKREIHQVQTEYGAIRLKVAK KGEKIVNVQPEYEDCAALARQENMPLIEVHKMVLQSWQLHYSEGLK >Mature_446_residues MNKIAYFECPTGIAGDMCLGALVHVGVPLNYLIEKLNLLGISQEYQLSAEKVHRNGLVATKFHVRLIHANPEDGEPLTFD HHHDHHHTHNLENKSSTKKHHHTHHRHLPEIEALIKKAGLPQRAEDWSLKVFRKLAEAEGAVHGIAPKQVHFHEVGATDA IIDIVGTCLGLDWLDIDLLYCSPLPIGGGTVKAAHGRLPVPVPAVLKLWELHNVPIYSNGLEKELCTPTGSAIACTFASS FGPPPPMFLERVGLGAGSQNLAIPNILRLWIGEGKASTQNFQITKSDAPTSQDIHLETVSVLETQIDDCSPQTIAYTFDA LFAAGALDVFSQPVTMKKSRLGVLLTVICTPEKLSACEEVIFQETTTLGIRCSIQQRSILKREIHQVQTEYGAIRLKVAK KGEKIVNVQPEYEDCAALARQENMPLIEVHKMVLQSWQLHYSEGLK
Specific function: Unknown
COG id: COG1641
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0272 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002822 [H]
Pfam domain/function: PF01969 DUF111 [H]
EC number: NA
Molecular weight: Translated: 49241; Mature: 49241
Theoretical pI: Translated: 6.84; Mature: 6.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKIAYFECPTGIAGDMCLGALVHVGVPLNYLIEKLNLLGISQEYQLSAEKVHRNGLVAT CCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEE KFHVRLIHANPEDGEPLTFDHHHDHHHTHNLENKSSTKKHHHTHHRHLPEIEALIKKAGL EEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCC PQRAEDWSLKVFRKLAEAEGAVHGIAPKQVHFHEVGATDAIIDIVGTCLGLDWLDIDLLY CCCCCCHHHHHHHHHHHHCCCEECCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEEE CSPLPIGGGTVKAAHGRLPVPVPAVLKLWELHNVPIYSNGLEKELCTPTGSAIACTFASS ECCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEECCCCCHHHCCCCCCEEEEEEHHC FGPPPPMFLERVGLGAGSQNLAIPNILRLWIGEGKASTQNFQITKSDAPTSQDIHLETVS CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEHHHHH VLETQIDDCSPQTIAYTFDALFAAGALDVFSQPVTMKKSRLGVLLTVICTPEKLSACEEV HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCHHHHHHHHH IFQETTTLGIRCSIQQRSILKREIHQVQTEYGAIRLKVAKKGEKIVNVQPEYEDCAALAR HHHHCCEEEEEEECHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEECCCCHHHHHHHHH QENMPLIEVHKMVLQSWQLHYSEGLK HCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNKIAYFECPTGIAGDMCLGALVHVGVPLNYLIEKLNLLGISQEYQLSAEKVHRNGLVAT CCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEE KFHVRLIHANPEDGEPLTFDHHHDHHHTHNLENKSSTKKHHHTHHRHLPEIEALIKKAGL EEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCC PQRAEDWSLKVFRKLAEAEGAVHGIAPKQVHFHEVGATDAIIDIVGTCLGLDWLDIDLLY CCCCCCHHHHHHHHHHHHCCCEECCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEEE CSPLPIGGGTVKAAHGRLPVPVPAVLKLWELHNVPIYSNGLEKELCTPTGSAIACTFASS ECCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEECCCCCHHHCCCCCCEEEEEEHHC FGPPPPMFLERVGLGAGSQNLAIPNILRLWIGEGKASTQNFQITKSDAPTSQDIHLETVS CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEHHHHH VLETQIDDCSPQTIAYTFDALFAAGALDVFSQPVTMKKSRLGVLLTVICTPEKLSACEEV HHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEEEEECCHHHHHHHHH IFQETTTLGIRCSIQQRSILKREIHQVQTEYGAIRLKVAKKGEKIVNVQPEYEDCAALAR HHHHCCEEEEEEECHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEECCCCHHHHHHHHH QENMPLIEVHKMVLQSWQLHYSEGLK HCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA