| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474347
Identifier: 113474347
GI number: 113474347
Start: 758513
End: 759103
Strand: Reverse
Name: 113474347
Synonym: Tery_0479
Alternate gene names: NA
Gene position: 759103-758513 (Counterclockwise)
Preceding gene: 113474349
Following gene: 113474338
Centisome position: 9.79
GC content: 34.01
Gene sequence:
>591_bases ATGATTTGTAAATTTACTGCTTCACAATCAGTAGATATTCCTGTAGTAGAACAAAAAGTTCCTATTCAACATTATCTTCG TCAACCAAAGCGCTTAGTTAATGCTTTAGTTGACCCAACAAGATTAGAGCAATTAGATCAAAATTGTTTCCGCCTAAAAA TGCGTCCACTACACTTTATGATGTTAAGCATTCAACCAACTGTAGATATGCGCTTGTGGTCTAGTACTAAAGGCAAAATT TACTTAAAGTCAGACAGATGTGAAATTCGTGGTGTAGAGTATATAAACCAACGCTTTAACCTGAATCTGGTTGGTATCCT TGATACCCTAGAATTGAAAGGAGTTACTCATCTCAAAGGTCAAGCTGATTTAGAAGTTAAAGTAGAATTACCCCCTCCAT TATTGTTGACACCATTACCAGTCTTAGAAACAACTGGTAATAGTTTACTCAAAAGTGTATTAATGACAATCAAACAAAGA TTAACCCATCAATTATTACTAGATTATTATAAATGGGCTAATGATGAAACCCAGGACTTAATCAAGAACAAAAACTATCC TATTTTATCTCCTAGTAGCCAAGGGATATAA
Upstream 100 bases:
>100_bases AAAATTAATGAAATTAACAAACTTTAATGTTAATTAATATTATTTCAATGTTAATTAATATTATATTTTAGCTATCAGCT ATTGATTTTTTTTTAAAATT
Downstream 100 bases:
>100_bases TTCATAAGTTTGATGTATTAGCATTTATACTTTTCTTCAGAGCTCACGGGATCTACATAAGAAATTGCCAACAATGTTAC AGTTTAACAAACAGTATATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MICKFTASQSVDIPVVEQKVPIQHYLRQPKRLVNALVDPTRLEQLDQNCFRLKMRPLHFMMLSIQPTVDMRLWSSTKGKI YLKSDRCEIRGVEYINQRFNLNLVGILDTLELKGVTHLKGQADLEVKVELPPPLLLTPLPVLETTGNSLLKSVLMTIKQR LTHQLLLDYYKWANDETQDLIKNKNYPILSPSSQGI
Sequences:
>Translated_196_residues MICKFTASQSVDIPVVEQKVPIQHYLRQPKRLVNALVDPTRLEQLDQNCFRLKMRPLHFMMLSIQPTVDMRLWSSTKGKI YLKSDRCEIRGVEYINQRFNLNLVGILDTLELKGVTHLKGQADLEVKVELPPPLLLTPLPVLETTGNSLLKSVLMTIKQR LTHQLLLDYYKWANDETQDLIKNKNYPILSPSSQGI >Mature_196_residues MICKFTASQSVDIPVVEQKVPIQHYLRQPKRLVNALVDPTRLEQLDQNCFRLKMRPLHFMMLSIQPTVDMRLWSSTKGKI YLKSDRCEIRGVEYINQRFNLNLVGILDTLELKGVTHLKGQADLEVKVELPPPLLLTPLPVLETTGNSLLKSVLMTIKQR LTHQLLLDYYKWANDETQDLIKNKNYPILSPSSQGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018971 [H]
Pfam domain/function: PF09366 DUF1997 [H]
EC number: NA
Molecular weight: Translated: 22578; Mature: 22578
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICKFTASQSVDIPVVEQKVPIQHYLRQPKRLVNALVDPTRLEQLDQNCFRLKMRPLHFM CEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEE MLSIQPTVDMRLWSSTKGKIYLKSDRCEIRGVEYINQRFNLNLVGILDTLELKGVTHLKG EEEECCCCCEEEECCCCCEEEEECCCCEECCHHHHHHHCCEEEEEEEEHHHHCCCEECCC QADLEVKVELPPPLLLTPLPVLETTGNSLLKSVLMTIKQRLTHQLLLDYYKWANDETQDL CCCEEEEEECCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH IKNKNYPILSPSSQGI HHCCCCCEECCCCCCC >Mature Secondary Structure MICKFTASQSVDIPVVEQKVPIQHYLRQPKRLVNALVDPTRLEQLDQNCFRLKMRPLHFM CEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEE MLSIQPTVDMRLWSSTKGKIYLKSDRCEIRGVEYINQRFNLNLVGILDTLELKGVTHLKG EEEECCCCCEEEECCCCCEEEEECCCCEECCHHHHHHHCCEEEEEEEEHHHHCCCEECCC QADLEVKVELPPPLLLTPLPVLETTGNSLLKSVLMTIKQRLTHQLLLDYYKWANDETQDL CCCEEEEEECCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH IKNKNYPILSPSSQGI HHCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1551590 [H]