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The map label for this gene is ykfC [H]

Identifier: 113474338

GI number: 113474338

Start: 748560

End: 749348

Strand: Reverse

Name: ykfC [H]

Synonym: Tery_0470

Alternate gene names: 113474338

Gene position: 749348-748560 (Counterclockwise)

Preceding gene: 113474347

Following gene: 113474337

Centisome position: 9.67

GC content: 38.53

Gene sequence:

>789_bases
ATGAATAAAGCTAAAACCCTAAAAAGAAGTTTAGAAAATCCTAAACCATTTTTAAGCGTGGCATGGGATACAAACGATAT
ACCAGATCCATGTAGTGTTAATCCTAATCTTAAATGGAAAGACATTAACTGGAAAAAGGTAGAAAAGTATGTGTTTAAGT
TGCAAAAATTAATTTACAGAGCATCCAGCCGTGGCGAAATCCGCAAGATGCGTAAATACCAAAAACTTCTGACCAAAAGT
TACTACGCCTTGTTGCTAGCTGTTAGACGGGTGACTCAGGATAACCAGGGTAAAAAAACTGCGGGTATAGATGGTATAAA
GAATCTACCCCCAATGCAAAGATTAAACCTGGTAAATTTATTAAAAAGACGCCGATTAAAAGCAAGCCCAACCCGCAGAG
TCTGGATACCAAAACCAGGGAGGAATGAAAAACGCCCATTAGGCATACCTACTATGTATGATAGGGCGCTACAAGCCTTG
GTTAAGTTGGGTAGGTCACCAGAGTGGGAGGCACACTTTGAATTTAACAGTTATAGCTTTAGACCAGGGCGGTCAACACA
TGATGCTATTGCAATCTATCTCAGCATTAATAAGAAACCAAAATATGTATTAGATGCTGACATATCCAAATGTTTTGACC
GAATTAATCATGATGCTTTGTTGAGAAAAATGGGTCAAACACCTTACAGACGATTAATCAAACAATGGTTAAAATCTGGA
GTGTTCGACAACAAGCAATTCTCAAAAACTGTGGAAGGTACACCACAAGGAGGGGTTATTAGTCCTTAA

Upstream 100 bases:

>100_bases
TGCACAAAAGTTGTAGGTCTTAAGGAGAGTAGGATTGAGTAAGAAGCATATTAATGCAGACGTAATCACTGTTAGACGTA
ATGTAAAGTAATAACTAGCT

Downstream 100 bases:

>100_bases
AGAGCAAACATCGCCTTACACGGTATGGAGAAGTGCCTAGAAAAATACGCCGAAACCCTACCGGGAAAAAAACACGGCAA
TAAAAAGGCACTATCCTTAA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MNKAKTLKRSLENPKPFLSVAWDTNDIPDPCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYALLLAVRRVTQDNQGKKTAGIDGIKNLPPMQRLNLVNLLKRRRLKASPTRRVWIPKPGRNEKRPLGIPTMYDRALQAL
VKLGRSPEWEAHFEFNSYSFRPGRSTHDAIAIYLSINKKPKYVLDADISKCFDRINHDALLRKMGQTPYRRLIKQWLKSG
VFDNKQFSKTVEGTPQGGVISP

Sequences:

>Translated_262_residues
MNKAKTLKRSLENPKPFLSVAWDTNDIPDPCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYALLLAVRRVTQDNQGKKTAGIDGIKNLPPMQRLNLVNLLKRRRLKASPTRRVWIPKPGRNEKRPLGIPTMYDRALQAL
VKLGRSPEWEAHFEFNSYSFRPGRSTHDAIAIYLSINKKPKYVLDADISKCFDRINHDALLRKMGQTPYRRLIKQWLKSG
VFDNKQFSKTVEGTPQGGVISP
>Mature_262_residues
MNKAKTLKRSLENPKPFLSVAWDTNDIPDPCSVNPNLKWKDINWKKVEKYVFKLQKLIYRASSRGEIRKMRKYQKLLTKS
YYALLLAVRRVTQDNQGKKTAGIDGIKNLPPMQRLNLVNLLKRRRLKASPTRRVWIPKPGRNEKRPLGIPTMYDRALQAL
VKLGRSPEWEAHFEFNSYSFRPGRSTHDAIAIYLSINKKPKYVLDADISKCFDRINHDALLRKMGQTPYRRLIKQWLKSG
VFDNKQFSKTVEGTPQGGVISP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=197, Percent_Identity=28.9340101522843, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6226521, Length=219, Percent_Identity=26.027397260274, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 30466; Mature: 30466

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAKTLKRSLENPKPFLSVAWDTNDIPDPCSVNPNLKWKDINWKKVEKYVFKLQKLIYR
CCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLTKSYYALLLAVRRVTQDNQGKKTAGIDGIKNLPPMQRLNLVNL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LKRRRLKASPTRRVWIPKPGRNEKRPLGIPTMYDRALQALVKLGRSPEWEAHFEFNSYSF
HHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEC
RPGRSTHDAIAIYLSINKKPKYVLDADISKCFDRINHDALLRKMGQTPYRRLIKQWLKSG
CCCCCCCCEEEEEEEECCCCCEEECHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCC
VFDNKQFSKTVEGTPQGGVISP
CCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNKAKTLKRSLENPKPFLSVAWDTNDIPDPCSVNPNLKWKDINWKKVEKYVFKLQKLIYR
CCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
ASSRGEIRKMRKYQKLLTKSYYALLLAVRRVTQDNQGKKTAGIDGIKNLPPMQRLNLVNL
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
LKRRRLKASPTRRVWIPKPGRNEKRPLGIPTMYDRALQALVKLGRSPEWEAHFEFNSYSF
HHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEC
RPGRSTHDAIAIYLSINKKPKYVLDADISKCFDRINHDALLRKMGQTPYRRLIKQWLKSG
CCCCCCCCEEEEEEEECCCCCEEECHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCC
VFDNKQFSKTVEGTPQGGVISP
CCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]