| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474209
Identifier: 113474209
GI number: 113474209
Start: 498095
End: 498529
Strand: Reverse
Name: 113474209
Synonym: Tery_0322
Alternate gene names: NA
Gene position: 498529-498095 (Counterclockwise)
Preceding gene: 113474210
Following gene: 113474204
Centisome position: 6.43
GC content: 35.86
Gene sequence:
>435_bases ATGAAAAAGCTGAACATTGTGGCCACTGCTTTGTCTACTGTGGCGATCGCTGGTAGTGTACTTTGTGCTAATTCTGTAGA AGCTTGTCTTTTGAAGAAAATTCATGGTTCAACATCAGAAAAATCTTTAATTTCACCAAATTCTTGGTTAAGCAAAAAAC TTCCTAATAGGTCTGACTTTGCTATTGCTGGTATTGCTGCTGCTTCTCTAGGTTTAACTGGGTTAGGTGCTTTTTTTACT ACTCGTTATATTACTCGTAAAGCAGAAGCTAATATTGATGCTAGTGATGAATCAAAAGAAGTACCAGCAGAACAAACATT TGTACAACAACATCCAGAAGCACCTGGTGGCCAACTAGATTTAGTTGAGGATAATTTGGTTGATAATATAGAATCAAAAG TTGTCGCGGATAAAGAAATTTCTCTTTTGAAATAA
Upstream 100 bases:
>100_bases TTCTGGAGATTAATAAAGTTAAGCTGAATACTTTTATTGCTACTTTTGGAAAATGATGTTAATATAATTATTTTAAGGAT ATTTTATCAACTAAACTAAC
Downstream 100 bases:
>100_bases TTTGATAATTAGAATAAGTAAAATAAATTTTATCTGAACTTCCAGTCTCTAAAAACTGGGAGTTTTTTGATATCCAGTAA GGAATAGAAAAAAAAGAATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MKKLNIVATALSTVAIAGSVLCANSVEACLLKKIHGSTSEKSLISPNSWLSKKLPNRSDFAIAGIAAASLGLTGLGAFFT TRYITRKAEANIDASDESKEVPAEQTFVQQHPEAPGGQLDLVEDNLVDNIESKVVADKEISLLK
Sequences:
>Translated_144_residues MKKLNIVATALSTVAIAGSVLCANSVEACLLKKIHGSTSEKSLISPNSWLSKKLPNRSDFAIAGIAAASLGLTGLGAFFT TRYITRKAEANIDASDESKEVPAEQTFVQQHPEAPGGQLDLVEDNLVDNIESKVVADKEISLLK >Mature_144_residues MKKLNIVATALSTVAIAGSVLCANSVEACLLKKIHGSTSEKSLISPNSWLSKKLPNRSDFAIAGIAAASLGLTGLGAFFT TRYITRKAEANIDASDESKEVPAEQTFVQQHPEAPGGQLDLVEDNLVDNIESKVVADKEISLLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15253; Mature: 15253
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLNIVATALSTVAIAGSVLCANSVEACLLKKIHGSTSEKSLISPNSWLSKKLPNRSDF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCC AIAGIAAASLGLTGLGAFFTTRYITRKAEANIDASDESKEVPAEQTFVQQHPEAPGGQLD HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEE LVEDNLVDNIESKVVADKEISLLK EECHHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure MKKLNIVATALSTVAIAGSVLCANSVEACLLKKIHGSTSEKSLISPNSWLSKKLPNRSDF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCC AIAGIAAASLGLTGLGAFFTTRYITRKAEANIDASDESKEVPAEQTFVQQHPEAPGGQLD HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEE LVEDNLVDNIESKVVADKEISLLK EECHHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA