| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474204
Identifier: 113474204
GI number: 113474204
Start: 489261
End: 490346
Strand: Reverse
Name: 113474204
Synonym: Tery_0317
Alternate gene names: NA
Gene position: 490346-489261 (Counterclockwise)
Preceding gene: 113474209
Following gene: 113474203
Centisome position: 6.33
GC content: 34.35
Gene sequence:
>1086_bases ATGGCACAACAATCTGACAGCAATAATTCCGCTAACAAATCCAGTCCACAAATAGTAGCTTCTCGAACTTTTATTAACTG GTTAGAAACTGAAAAAATTAGTCTAGCATTTAGCACTTATAAAACTTCTAGATTACTTTTGCTAGGAGTTAATCCCCAAG GTGAATTTTCTGGCTTTGAGCGTTTGTTTAATCGTGCCATGGGATTATATGCTACTTCAGAACGATTATATATGAGTTCA AAATATCAACTGTGGCAGTTAGATAATGTTCTCCAAAAAGAACAATTTTACAATGGTTATGATAAACTTTATGTTCCCAG AATAGCTTATACAACTGGGGATTTAGATATTCATGATATTATTGTTGACAAGAATGACAGAATCATTTTTGTTAGTAGCT TATTGAACTGTTTAGCTACAGTTAGCCATAAAAATAGTTGTACTCCCTTATGGAAACCACCTTTTATTTCTGACATTATT AATGAAGACCGTTGTCACCTAAATGGTTTAGCAATGGTAGAAGGAAAACCTTCATATGTTACTTCTGTTAGTACTTCAGA TGTAATTGATGGTTGGCGAGAAAGAAGAAGGGATGGTGGTTGTGTAATTGATATTGCATCAAACGAGATTATTATGAGTG GTTTATCCATGCCTCATTCCCCCAGATTTTATCAAGGAAAGTTGTGGTTATTGAACTCTGGAAAAGGTTTTTTTGGTGTA GTTGATTTAAATACGGGTAGGTTTGAACCGATAACTTTTTGCCCTGGTTTTTTGCGAGGTTTAGCTTTTTGGAAAAATTG GGCGATCGTAGGATTATCTAAACCCAGGGATAGAACTTTTTTGGGTTTAGAATTAGATGAAAATTTATTTGCTAAAGATG TGAAACCTCGTTGTGGTTTAATGGTAATTGATATTAATACAGGTAGTATAGTTGAATGGTTGCGCTTAGAAGGAGTAATT ACAGAATTATACGACGTACAGATATTACCAGGAGTTCAACGACCAATGGCTTTAGGATTTCAAACAGATGAAATTAGTCG TCTGTTGACTTTGGACCCAATGGAATTTCTTTTGGAAAAAGAATAA
Upstream 100 bases:
>100_bases AAACTTTGAATCAGAAAAAAAGTAGGAATTAAATGAACCTCATAAATAAATACATGAGATTCATTCAAAAAAACTTCACT AAGAAATTATCTAAATAAAA
Downstream 100 bases:
>100_bases GTAGTTTGTTAGAAAAATACAAATTTTTTTTACAAAGTGTGTAAATAGAGAAACTAATTTGCCAGAATATAAATAGATAA TAGGGTACAAAAAAATCATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MAQQSDSNNSANKSSPQIVASRTFINWLETEKISLAFSTYKTSRLLLLGVNPQGEFSGFERLFNRAMGLYATSERLYMSS KYQLWQLDNVLQKEQFYNGYDKLYVPRIAYTTGDLDIHDIIVDKNDRIIFVSSLLNCLATVSHKNSCTPLWKPPFISDII NEDRCHLNGLAMVEGKPSYVTSVSTSDVIDGWRERRRDGGCVIDIASNEIIMSGLSMPHSPRFYQGKLWLLNSGKGFFGV VDLNTGRFEPITFCPGFLRGLAFWKNWAIVGLSKPRDRTFLGLELDENLFAKDVKPRCGLMVIDINTGSIVEWLRLEGVI TELYDVQILPGVQRPMALGFQTDEISRLLTLDPMEFLLEKE
Sequences:
>Translated_361_residues MAQQSDSNNSANKSSPQIVASRTFINWLETEKISLAFSTYKTSRLLLLGVNPQGEFSGFERLFNRAMGLYATSERLYMSS KYQLWQLDNVLQKEQFYNGYDKLYVPRIAYTTGDLDIHDIIVDKNDRIIFVSSLLNCLATVSHKNSCTPLWKPPFISDII NEDRCHLNGLAMVEGKPSYVTSVSTSDVIDGWRERRRDGGCVIDIASNEIIMSGLSMPHSPRFYQGKLWLLNSGKGFFGV VDLNTGRFEPITFCPGFLRGLAFWKNWAIVGLSKPRDRTFLGLELDENLFAKDVKPRCGLMVIDINTGSIVEWLRLEGVI TELYDVQILPGVQRPMALGFQTDEISRLLTLDPMEFLLEKE >Mature_360_residues AQQSDSNNSANKSSPQIVASRTFINWLETEKISLAFSTYKTSRLLLLGVNPQGEFSGFERLFNRAMGLYATSERLYMSSK YQLWQLDNVLQKEQFYNGYDKLYVPRIAYTTGDLDIHDIIVDKNDRIIFVSSLLNCLATVSHKNSCTPLWKPPFISDIIN EDRCHLNGLAMVEGKPSYVTSVSTSDVIDGWRERRRDGGCVIDIASNEIIMSGLSMPHSPRFYQGKLWLLNSGKGFFGVV DLNTGRFEPITFCPGFLRGLAFWKNWAIVGLSKPRDRTFLGLELDENLFAKDVKPRCGLMVIDINTGSIVEWLRLEGVIT ELYDVQILPGVQRPMALGFQTDEISRLLTLDPMEFLLEKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40968; Mature: 40836
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQSDSNNSANKSSPQIVASRTFINWLETEKISLAFSTYKTSRLLLLGVNPQGEFSGFE CCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCEEEEEEEEECCCEEEEEECCCCCCHHHHH RLFNRAMGLYATSERLYMSSKYQLWQLDNVLQKEQFYNGYDKLYVPRIAYTTGDLDIHDI HHHHHHHCCEEECCEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE IVDKNDRIIFVSSLLNCLATVSHKNSCTPLWKPPFISDIINEDRCHLNGLAMVEGKPSYV EEECCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEECCEEEECCCCCEE TSVSTSDVIDGWRERRRDGGCVIDIASNEIIMSGLSMPHSPRFYQGKLWLLNSGKGFFGV EECCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCEEECEEEEEECCCCEEEE VDLNTGRFEPITFCPGFLRGLAFWKNWAIVGLSKPRDRTFLGLELDENLFAKDVKPRCGL EECCCCCCCCEEECHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCHHHHCCCCCCCE MVIDINTGSIVEWLRLEGVITELYDVQILPGVQRPMALGFQTDEISRLLTLDPMEFLLEK EEEEECCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHEEECHHHHHCCC E C >Mature Secondary Structure AQQSDSNNSANKSSPQIVASRTFINWLETEKISLAFSTYKTSRLLLLGVNPQGEFSGFE CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCEEEEEEEEECCCEEEEEECCCCCCHHHHH RLFNRAMGLYATSERLYMSSKYQLWQLDNVLQKEQFYNGYDKLYVPRIAYTTGDLDIHDI HHHHHHHCCEEECCEEEECCCCEEEHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE IVDKNDRIIFVSSLLNCLATVSHKNSCTPLWKPPFISDIINEDRCHLNGLAMVEGKPSYV EEECCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEECCEEEECCCCCEE TSVSTSDVIDGWRERRRDGGCVIDIASNEIIMSGLSMPHSPRFYQGKLWLLNSGKGFFGV EECCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCCEEECEEEEEECCCCEEEE VDLNTGRFEPITFCPGFLRGLAFWKNWAIVGLSKPRDRTFLGLELDENLFAKDVKPRCGL EECCCCCCCCEEECHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCHHHHCCCCCCCE MVIDINTGSIVEWLRLEGVITELYDVQILPGVQRPMALGFQTDEISRLLTLDPMEFLLEK EEEEECCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHEEECHHHHHCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA