| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474203
Identifier: 113474203
GI number: 113474203
Start: 488541
End: 489149
Strand: Reverse
Name: 113474203
Synonym: Tery_0316
Alternate gene names: NA
Gene position: 489149-488541 (Counterclockwise)
Preceding gene: 113474204
Following gene: 113474202
Centisome position: 6.31
GC content: 35.14
Gene sequence:
>609_bases ATGGCATCAGCTTATGTTTTTTGTCTAGTTATTGGGGGAGTGTTTGTTGCACTTTCGGCATTTGCAGGTCTAGATGGTGT AGACTTTGATCAAGACTTTGAGGCAGACCTAGAAATAACTGACCAAGGAGATAAACAAGGTAATACCTCAATATATCAAT ATGGTCGGCGGCTATGGCTACCATTATTTAGTTTAAAATTTTGGACTTTTGGGAGTTGCTTTTTTGGCTTAACTGGAGTT TTATTACACTATCTTTCTCCCAACCTTTCACCAAAAATAATTGCTATTATTTCTATAATTGTTGGTATTTTATGTGGCAC AATTATGGCATGGGTATTACATACTCTAAAAAATAGTCAGGTTAATAGTTTGGTGCGTAGTAATGATTTAGTCGGTCTTT GGGGAACGGTTGAGATTCCTTTTGATAGAAATAGTAAGGGAAAAATTAGAGTAAGTGTTAAGGGATCTGTGGTAGCATTT ACGGCTTTTACTGAAGAAAACAGGGAGTTTACTAAAAAAGAAAAAGTATTTATAGTAGGAGTAGAAAATAGTAGGGTATT GGTAGTATCAGAAGATTCCCTAGCTAGATCTTATGATGAGAAATCTTAG
Upstream 100 bases:
>100_bases GAAAAATACAAATTTTTTTTACAAAGTGTGTAAATAGAGAAACTAATTTGCCAGAATATAAATAGATAATAGGGTACAAA AAAATCATGAAGGACATTTT
Downstream 100 bases:
>100_bases AATTTTTTTGCTAAGAAACGAATCAAGATGAAAAATCAAACTCTAATGCTAGCTTATATATCAGTGGCAGTGAAAATATT TGGCGGGATGTTAATAGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MASAYVFCLVIGGVFVALSAFAGLDGVDFDQDFEADLEITDQGDKQGNTSIYQYGRRLWLPLFSLKFWTFGSCFFGLTGV LLHYLSPNLSPKIIAIISIIVGILCGTIMAWVLHTLKNSQVNSLVRSNDLVGLWGTVEIPFDRNSKGKIRVSVKGSVVAF TAFTEENREFTKKEKVFIVGVENSRVLVVSEDSLARSYDEKS
Sequences:
>Translated_202_residues MASAYVFCLVIGGVFVALSAFAGLDGVDFDQDFEADLEITDQGDKQGNTSIYQYGRRLWLPLFSLKFWTFGSCFFGLTGV LLHYLSPNLSPKIIAIISIIVGILCGTIMAWVLHTLKNSQVNSLVRSNDLVGLWGTVEIPFDRNSKGKIRVSVKGSVVAF TAFTEENREFTKKEKVFIVGVENSRVLVVSEDSLARSYDEKS >Mature_201_residues ASAYVFCLVIGGVFVALSAFAGLDGVDFDQDFEADLEITDQGDKQGNTSIYQYGRRLWLPLFSLKFWTFGSCFFGLTGVL LHYLSPNLSPKIIAIISIIVGILCGTIMAWVLHTLKNSQVNSLVRSNDLVGLWGTVEIPFDRNSKGKIRVSVKGSVVAFT AFTEENREFTKKEKVFIVGVENSRVLVVSEDSLARSYDEKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22350; Mature: 22219
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASAYVFCLVIGGVFVALSAFAGLDGVDFDQDFEADLEITDQGDKQGNTSIYQYGRRLWL CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH PLFSLKFWTFGSCFFGLTGVLLHYLSPNLSPKIIAIISIIVGILCGTIMAWVLHTLKNSQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VNSLVRSNDLVGLWGTVEIPFDRNSKGKIRVSVKGSVVAFTAFTEENREFTKKEKVFIVG HHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCCHHHHCCCCEEEEE VENSRVLVVSEDSLARSYDEKS ECCCEEEEEECCHHHHHCCCCC >Mature Secondary Structure ASAYVFCLVIGGVFVALSAFAGLDGVDFDQDFEADLEITDQGDKQGNTSIYQYGRRLWL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH PLFSLKFWTFGSCFFGLTGVLLHYLSPNLSPKIIAIISIIVGILCGTIMAWVLHTLKNSQ HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH VNSLVRSNDLVGLWGTVEIPFDRNSKGKIRVSVKGSVVAFTAFTEENREFTKKEKVFIVG HHHHHHCCCEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCCHHHHCCCCEEEEE VENSRVLVVSEDSLARSYDEKS ECCCEEEEEECCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA