Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474093

Identifier: 113474093

GI number: 113474093

Start: 285862

End: 287871

Strand: Reverse

Name: 113474093

Synonym: Tery_0190

Alternate gene names: NA

Gene position: 287871-285862 (Counterclockwise)

Preceding gene: 113474095

Following gene: 113474088

Centisome position: 3.71

GC content: 40.15

Gene sequence:

>2010_bases
ATGCCAATAAAAACCAACCCAATAGCTAGCCTAATTCTCAGCTTATTTTCCCTGGCTCCAGCTATTACACCAACTTTAGC
CGCGCTACCCTCTACCCCAGATCAAGAAGAAACCTGCGAAATTTTAGTTATCGGTGGTGGGTTAGCAGGAGCTGCAACCG
CCTATGAAGCATTATTAGCAGGGCGCACCGTTTGTATGACTGAAATCACTGACTGGGTAGGCGGTCAAATTTCCTCTCAA
GGCACCTCTGCTCTTGACGAACGCGGAACTCAACGCAGTCTTCTATTTTATCCCCGTGGTTATCTAGAGTTACGCGAACG
CATTAAAGAAAAATATGGTAGATTAAACCCTGGCAACTGTTGGGTAAGTGTTTCCTGTTTTATGCCTTACGATGGTCACG
CTATCCTATTCCAGATGTTAGAAAATGCTGCCAAAAAAGGTGGCGGTACATTAAAATGGTTTCCCAATACTGTTATCAAA
CAATTAGACATTTCTCAGAACCAAATTAATAAGGCGATCGCTATCCAACATCAACCAGCAGATGATACCCCACCCATAAA
CATTGAACCTCTATCTCAAATTATCGAAGATGCCTACCTTTACGAAAATTCAGCAAGATTTGATAAAACTATAATTCAGT
TTGTACCTCAACCATCTTCAGAAAAAACAGGTGGTGCAGACTGGTACGTTGTTGAAGCAACTGAAACCGGAGAAGTTATT
GCTCTGGCAGATGTTCCCTACCGTCTGGGTATCGATCCCCAAACCTACGTTAACCCCTCATCTCCTATTGATACCACAGA
CCCCTACTGCACTCAAGGTTTCACTTACACTTTTGCGATGGAGGCGACTAAAACACCTCAAGCCCATGTCAAACCGCCAT
TTTATTCTCAGTATTCCCCCTACTATAGTTATGAATTATCTAGATTAGCTAATTTCAACCTAGTTTTCAGCTATAGACAA
ATTTGGTCGACGAAACCAGACGCACCTCAACCAGGTAACTACAGAAAACGAACTATTTATCCCGGTGATATTTCCATGCA
AAATTGGACTTGGGGTAATGACTACCGCCCTGGAAACAAGGATGATAATTTAATTTACAGTCGAGGGCAACTACAAGCTA
CAGGTCAACTACAACCGGGAGGCTGGATGGGCGGCTTGCGTACTGAAGCCCTCCGTCGAGGTGAGGAAAATGCTCTTGGT
TATTTTTATTGGTTAGTTGAAGGTACTACTGACTCCCAGTTAGGAGAAGGAGTGAAGCAAAAATATCCAAATTATCGTTT
ATTGAGTGGGTTTGATACACCGATGGGAACAGCCCATGGGTTATCAAAATATCCTTATATTCGAGAAGGACGACGCATTA
TTGGTCGTGTTGGAAAAACTCATCCAAGAGGTTTTACAGTGGTGGAGGTTGATATTGCTAAAAAGAATTTTCGGGATGAT
TTTTATCAAAAAAATTTAAGGTCAGATGAGTTTAATTATCTTTGGGGAATAGTTGGTGGTTTTGTACCTAAAAATTCAAA
AATTAATTCAGTAGAAAAAATCCCTCAACGAGCAAGGGCAACTGTTTTTCCTGATAGTGTAGGAATTGGTCATTATGCCA
TAGATTTTCATCCTTGCATGACAAAAAGCCCGCCAGAAGTACCAAATAATTCTGAACGAAAAGACATTAGGAAAGGTCAG
GGTGCTACCTATCCTTTTCAAATACCTTTACGAGCAATGATCCCGCAAAGAATTAATAATTTATTAGTAGCTGGAAAGAG
TATTGCAACAAGTTATATTGCTGCTGCTGCCTATCGAGTTCATTCTTTTGAATGGTCTGTTGGAGCTGCTGCTGGTACAA
CAATTGATTTTGCTTTAGAAAGAGGTATTTTTCCTTATGAATTAATTGATGATATGCCTTCTAAAGAATGGGAATTAGAA
ATATTACAAGGTGATTTAAATAAAAATGGGAATCACACAGCTTTTCCTGAAACTTCTATTTTTAATAATTCTTGGAATGA
ATGGAAATAG

Upstream 100 bases:

>100_bases
CCGGATTTTGTACTATACTAAGTTAATAAGATAATACAACAAGATATTATACCAATTTACTATAAGTGAACTTTTGCCTT
TTCATATTTAACTGTAAATT

Downstream 100 bases:

>100_bases
AATTAAAGATGAGTTATTTGTGTTGAGTATAACATCCAAGAAATATACTTTTATATCAAGTGTGAAAAAAGAATGCTTAA
GTTGGCTGACAGTTCAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 669; Mature: 668

Protein sequence:

>669_residues
MPIKTNPIASLILSLFSLAPAITPTLAALPSTPDQEETCEILVIGGGLAGAATAYEALLAGRTVCMTEITDWVGGQISSQ
GTSALDERGTQRSLLFYPRGYLELRERIKEKYGRLNPGNCWVSVSCFMPYDGHAILFQMLENAAKKGGGTLKWFPNTVIK
QLDISQNQINKAIAIQHQPADDTPPINIEPLSQIIEDAYLYENSARFDKTIIQFVPQPSSEKTGGADWYVVEATETGEVI
ALADVPYRLGIDPQTYVNPSSPIDTTDPYCTQGFTYTFAMEATKTPQAHVKPPFYSQYSPYYSYELSRLANFNLVFSYRQ
IWSTKPDAPQPGNYRKRTIYPGDISMQNWTWGNDYRPGNKDDNLIYSRGQLQATGQLQPGGWMGGLRTEALRRGEENALG
YFYWLVEGTTDSQLGEGVKQKYPNYRLLSGFDTPMGTAHGLSKYPYIREGRRIIGRVGKTHPRGFTVVEVDIAKKNFRDD
FYQKNLRSDEFNYLWGIVGGFVPKNSKINSVEKIPQRARATVFPDSVGIGHYAIDFHPCMTKSPPEVPNNSERKDIRKGQ
GATYPFQIPLRAMIPQRINNLLVAGKSIATSYIAAAAYRVHSFEWSVGAAAGTTIDFALERGIFPYELIDDMPSKEWELE
ILQGDLNKNGNHTAFPETSIFNNSWNEWK

Sequences:

>Translated_669_residues
MPIKTNPIASLILSLFSLAPAITPTLAALPSTPDQEETCEILVIGGGLAGAATAYEALLAGRTVCMTEITDWVGGQISSQ
GTSALDERGTQRSLLFYPRGYLELRERIKEKYGRLNPGNCWVSVSCFMPYDGHAILFQMLENAAKKGGGTLKWFPNTVIK
QLDISQNQINKAIAIQHQPADDTPPINIEPLSQIIEDAYLYENSARFDKTIIQFVPQPSSEKTGGADWYVVEATETGEVI
ALADVPYRLGIDPQTYVNPSSPIDTTDPYCTQGFTYTFAMEATKTPQAHVKPPFYSQYSPYYSYELSRLANFNLVFSYRQ
IWSTKPDAPQPGNYRKRTIYPGDISMQNWTWGNDYRPGNKDDNLIYSRGQLQATGQLQPGGWMGGLRTEALRRGEENALG
YFYWLVEGTTDSQLGEGVKQKYPNYRLLSGFDTPMGTAHGLSKYPYIREGRRIIGRVGKTHPRGFTVVEVDIAKKNFRDD
FYQKNLRSDEFNYLWGIVGGFVPKNSKINSVEKIPQRARATVFPDSVGIGHYAIDFHPCMTKSPPEVPNNSERKDIRKGQ
GATYPFQIPLRAMIPQRINNLLVAGKSIATSYIAAAAYRVHSFEWSVGAAAGTTIDFALERGIFPYELIDDMPSKEWELE
ILQGDLNKNGNHTAFPETSIFNNSWNEWK
>Mature_668_residues
PIKTNPIASLILSLFSLAPAITPTLAALPSTPDQEETCEILVIGGGLAGAATAYEALLAGRTVCMTEITDWVGGQISSQG
TSALDERGTQRSLLFYPRGYLELRERIKEKYGRLNPGNCWVSVSCFMPYDGHAILFQMLENAAKKGGGTLKWFPNTVIKQ
LDISQNQINKAIAIQHQPADDTPPINIEPLSQIIEDAYLYENSARFDKTIIQFVPQPSSEKTGGADWYVVEATETGEVIA
LADVPYRLGIDPQTYVNPSSPIDTTDPYCTQGFTYTFAMEATKTPQAHVKPPFYSQYSPYYSYELSRLANFNLVFSYRQI
WSTKPDAPQPGNYRKRTIYPGDISMQNWTWGNDYRPGNKDDNLIYSRGQLQATGQLQPGGWMGGLRTEALRRGEENALGY
FYWLVEGTTDSQLGEGVKQKYPNYRLLSGFDTPMGTAHGLSKYPYIREGRRIIGRVGKTHPRGFTVVEVDIAKKNFRDDF
YQKNLRSDEFNYLWGIVGGFVPKNSKINSVEKIPQRARATVFPDSVGIGHYAIDFHPCMTKSPPEVPNNSERKDIRKGQG
ATYPFQIPLRAMIPQRINNLLVAGKSIATSYIAAAAYRVHSFEWSVGAAAGTTIDFALERGIFPYELIDDMPSKEWELEI
LQGDLNKNGNHTAFPETSIFNNSWNEWK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74856; Mature: 74725

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIKTNPIASLILSLFSLAPAITPTLAALPSTPDQEETCEILVIGGGLAGAATAYEALLA
CCCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
GRTVCMTEITDWVGGQISSQGTSALDERGTQRSLLFYPRGYLELRERIKEKYGRLNPGNC
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCE
WVSVSCFMPYDGHAILFQMLENAAKKGGGTLKWFPNTVIKQLDISQNQINKAIAIQHQPA
EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHCCCEEEEEECCC
DDTPPINIEPLSQIIEDAYLYENSARFDKTIIQFVPQPSSEKTGGADWYVVEATETGEVI
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEE
ALADVPYRLGIDPQTYVNPSSPIDTTDPYCTQGFTYTFAMEATKTPQAHVKPPFYSQYSP
EEECCCEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
YYSYELSRLANFNLVFSYRQIWSTKPDAPQPGNYRKRTIYPGDISMQNWTWGNDYRPGNK
CHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
DDNLIYSRGQLQATGQLQPGGWMGGLRTEALRRGEENALGYFYWLVEGTTDSQLGEGVKQ
CCCEEEECCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
KYPNYRLLSGFDTPMGTAHGLSKYPYIREGRRIIGRVGKTHPRGFTVVEVDIAKKNFRDD
HCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHH
FYQKNLRSDEFNYLWGIVGGFVPKNSKINSVEKIPQRARATVFPDSVGIGHYAIDFHPCM
HHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEECCCCCCCCEEEEEEECCC
TKSPPEVPNNSERKDIRKGQGATYPFQIPLRAMIPQRINNLLVAGKSIATSYIAAAAYRV
CCCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHHHHEECCHHHHHHHHHHHHHHH
HSFEWSVGAAAGTTIDFALERGIFPYELIDDMPSKEWELEILQGDLNKNGNHTAFPETSI
EEEEECCCCCCCCEEHHHHHCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHH
FNNSWNEWK
CCCCCCCCC
>Mature Secondary Structure 
PIKTNPIASLILSLFSLAPAITPTLAALPSTPDQEETCEILVIGGGLAGAATAYEALLA
CCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
GRTVCMTEITDWVGGQISSQGTSALDERGTQRSLLFYPRGYLELRERIKEKYGRLNPGNC
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCE
WVSVSCFMPYDGHAILFQMLENAAKKGGGTLKWFPNTVIKQLDISQNQINKAIAIQHQPA
EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCHHHCCCEEEEEECCC
DDTPPINIEPLSQIIEDAYLYENSARFDKTIIQFVPQPSSEKTGGADWYVVEATETGEVI
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEE
ALADVPYRLGIDPQTYVNPSSPIDTTDPYCTQGFTYTFAMEATKTPQAHVKPPFYSQYSP
EEECCCEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
YYSYELSRLANFNLVFSYRQIWSTKPDAPQPGNYRKRTIYPGDISMQNWTWGNDYRPGNK
CHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
DDNLIYSRGQLQATGQLQPGGWMGGLRTEALRRGEENALGYFYWLVEGTTDSQLGEGVKQ
CCCEEEECCCEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
KYPNYRLLSGFDTPMGTAHGLSKYPYIREGRRIIGRVGKTHPRGFTVVEVDIAKKNFRDD
HCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHH
FYQKNLRSDEFNYLWGIVGGFVPKNSKINSVEKIPQRARATVFPDSVGIGHYAIDFHPCM
HHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEECCCCCCCCEEEEEEECCC
TKSPPEVPNNSERKDIRKGQGATYPFQIPLRAMIPQRINNLLVAGKSIATSYIAAAAYRV
CCCCCCCCCCCCHHHHHCCCCCCCEEECCHHHHHHHHHHHHEECCHHHHHHHHHHHHHHH
HSFEWSVGAAAGTTIDFALERGIFPYELIDDMPSKEWELEILQGDLNKNGNHTAFPETSI
EEEEECCCCCCCCEEHHHHHCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCHH
FNNSWNEWK
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA