| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474095
Identifier: 113474095
GI number: 113474095
Start: 289976
End: 291565
Strand: Reverse
Name: 113474095
Synonym: Tery_0193
Alternate gene names: NA
Gene position: 291565-289976 (Counterclockwise)
Preceding gene: 113474096
Following gene: 113474093
Centisome position: 3.76
GC content: 37.11
Gene sequence:
>1590_bases ATGACAAAATTAGATACTGCTAATAGAGAAAAAGCCTTACTATTCAGGGAACTACAAACTCATTTATGCGATCGCTGGCA AAATATAGATTTACCTGACCAGGGTGACTCGGATATTTTGATTATCCCTTCTGTAAGCCTAGACCAACGAGAGTTGCTAA AAATACAGGGTGCTCACAATTACGAAGAACGACATCTATTTTCTTTAATACGTCTGCGTAACCCCCGCACCCGATTAATT TATGTTACTTCTGAACCTCTACATCCCAGCATTATTGACTACTATTTGCAACTATTACCAGGAATTCCTTTTTCTCACGC TCGCGATCGCTTGCTCCTATTTGCTACTTATGATGCTTCTAGCAGGCCTCTAACTGAAAAAATTTTAGAACGCCCCCGTC TCATTGAGCGTATTCATCTGGCGTTGCGTCAGGAAAAATCTTACATGGTTTGTTATAATTGTACTCCACTTGAACGAGAA TTGTCTGTGCACTTAGGTATTCCTCTATTAGGGACAGACCCAGATTTGAGTTATTGGGGTACTAAAAGTGGTAGTAGACA AATCTTTACTGAATGTAATATTCCTCATCCTGATGGTAGTGAGTTAGTTTGGAATGTTGATGATTTGGCATTAGTAACAT CCCAGTTGTGGGAACGGCAACCTCACCTCCAACGGATAGTTATTAAGTTGAATGAGGGTTTTTCAGGAGAAGGTAATGCC CTGTTAGATTTACAACCACTACAAAAAGTCGGGAAGAGTGATAGGGTGAAAGCTATACTTAATAGTTTTAGGACACTGCG GTTTCAGTCTGTTGATGAAACTTGGGAAAATTTTAGTAAGCGCATTTTTGAACTAGGGGCAATAGCAGAAGCTTTTATAG AGGGAGATGTGAAGCGATCGCCCAGTGTGCAAGCTCGAATTACACCTAAAGGTGAAGTTGAAATTATCTCTACCCATGAC CAAATTTTGGGGGGACCTGATGGGCAAATTTTTATCGGTTGTCGTTTTCCTGCTGATGAAGCTTACCGATTAAATTTACA AAATTTAGGTATAAAAATCGGAAAAGTTTTGGCGAGAAAAGGTGCTTTGGATAAGTTTGGAGTAGATTTTATCGCTGTAA ATAAAGGTACAAATAAATCGCCAAAATGGGATTTATTTGCGATTGAAATTAACTTACGTCGGGGTGGTACAACTCATCCA TTTATGACATTAAAGTTATTAACAAATGGAAGTTATGATTATGAAACTGGTTTATTTTATAGTCAGCACGGGCCTGCAAA ATTTTACAAAGCTACGGACAATTTACAAAAAATTTGTTATCGGGGTTTATTGCCTAATGATTTAATGGATATTGTGGCTT TTAATAGATTACATTTTGATAGTAGTACTGAAACAGGAACGTTATTTCATATGATGGGTTGTTTATCACAATTTGGCAAA TTAGGCTTAACAAGTATTGGTAATTCTCCTAAACAAGCAGAGGAAGTTTATCAGAAAGTTGTTGATACTTTAGATAATGA AACTGTAGGAAATAATAAGAGTTGGGGATTACCCACAACTAATACTATTTCTTGGAATAGTTCAATTTAA
Upstream 100 bases:
>100_bases GGCCATTTTAGATAAACGGGACTTACCCAAAGGCACTAAATGCTGATTATTATAGATGTCAAATTAGTTCTATCAAACTC AATAATAATTGATAAAAACT
Downstream 100 bases:
>100_bases TTTATTATTACTAAGCTTGAGTTTTTTCTTTCGAGATGCTGAACTAACAGGAAACATGGATGTTAATAGGCATTTCATGG AAGTCAAAAGTTAACCACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MTKLDTANREKALLFRELQTHLCDRWQNIDLPDQGDSDILIIPSVSLDQRELLKIQGAHNYEERHLFSLIRLRNPRTRLI YVTSEPLHPSIIDYYLQLLPGIPFSHARDRLLLFATYDASSRPLTEKILERPRLIERIHLALRQEKSYMVCYNCTPLERE LSVHLGIPLLGTDPDLSYWGTKSGSRQIFTECNIPHPDGSELVWNVDDLALVTSQLWERQPHLQRIVIKLNEGFSGEGNA LLDLQPLQKVGKSDRVKAILNSFRTLRFQSVDETWENFSKRIFELGAIAEAFIEGDVKRSPSVQARITPKGEVEIISTHD QILGGPDGQIFIGCRFPADEAYRLNLQNLGIKIGKVLARKGALDKFGVDFIAVNKGTNKSPKWDLFAIEINLRRGGTTHP FMTLKLLTNGSYDYETGLFYSQHGPAKFYKATDNLQKICYRGLLPNDLMDIVAFNRLHFDSSTETGTLFHMMGCLSQFGK LGLTSIGNSPKQAEEVYQKVVDTLDNETVGNNKSWGLPTTNTISWNSSI
Sequences:
>Translated_529_residues MTKLDTANREKALLFRELQTHLCDRWQNIDLPDQGDSDILIIPSVSLDQRELLKIQGAHNYEERHLFSLIRLRNPRTRLI YVTSEPLHPSIIDYYLQLLPGIPFSHARDRLLLFATYDASSRPLTEKILERPRLIERIHLALRQEKSYMVCYNCTPLERE LSVHLGIPLLGTDPDLSYWGTKSGSRQIFTECNIPHPDGSELVWNVDDLALVTSQLWERQPHLQRIVIKLNEGFSGEGNA LLDLQPLQKVGKSDRVKAILNSFRTLRFQSVDETWENFSKRIFELGAIAEAFIEGDVKRSPSVQARITPKGEVEIISTHD QILGGPDGQIFIGCRFPADEAYRLNLQNLGIKIGKVLARKGALDKFGVDFIAVNKGTNKSPKWDLFAIEINLRRGGTTHP FMTLKLLTNGSYDYETGLFYSQHGPAKFYKATDNLQKICYRGLLPNDLMDIVAFNRLHFDSSTETGTLFHMMGCLSQFGK LGLTSIGNSPKQAEEVYQKVVDTLDNETVGNNKSWGLPTTNTISWNSSI >Mature_528_residues TKLDTANREKALLFRELQTHLCDRWQNIDLPDQGDSDILIIPSVSLDQRELLKIQGAHNYEERHLFSLIRLRNPRTRLIY VTSEPLHPSIIDYYLQLLPGIPFSHARDRLLLFATYDASSRPLTEKILERPRLIERIHLALRQEKSYMVCYNCTPLEREL SVHLGIPLLGTDPDLSYWGTKSGSRQIFTECNIPHPDGSELVWNVDDLALVTSQLWERQPHLQRIVIKLNEGFSGEGNAL LDLQPLQKVGKSDRVKAILNSFRTLRFQSVDETWENFSKRIFELGAIAEAFIEGDVKRSPSVQARITPKGEVEIISTHDQ ILGGPDGQIFIGCRFPADEAYRLNLQNLGIKIGKVLARKGALDKFGVDFIAVNKGTNKSPKWDLFAIEINLRRGGTTHPF MTLKLLTNGSYDYETGLFYSQHGPAKFYKATDNLQKICYRGLLPNDLMDIVAFNRLHFDSSTETGTLFHMMGCLSQFGKL GLTSIGNSPKQAEEVYQKVVDTLDNETVGNNKSWGLPTTNTISWNSSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI72534720, Length=442, Percent_Identity=23.0769230769231, Blast_Score=89, Evalue=7e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60000; Mature: 59869
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLDTANREKALLFRELQTHLCDRWQNIDLPDQGDSDILIIPSVSLDQRELLKIQGAHN CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHEECCCCC YEERHLFSLIRLRNPRTRLIYVTSEPLHPSIIDYYLQLLPGIPFSHARDRLLLFATYDAS HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC SRPLTEKILERPRLIERIHLALRQEKSYMVCYNCTPLERELSVHLGIPLLGTDPDLSYWG CCCHHHHHHHCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCEEECCCCCCCCCC TKSGSRQIFTECNIPHPDGSELVWNVDDLALVTSQLWERQPHLQRIVIKLNEGFSGEGNA CCCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCE LLDLQPLQKVGKSDRVKAILNSFRTLRFQSVDETWENFSKRIFELGAIAEAFIEGDVKRS EEEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PSVQARITPKGEVEIISTHDQILGGPDGQIFIGCRFPADEAYRLNLQNLGIKIGKVLARK CCCEEEECCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCEEEEHHHCCHHHHHHHHHC GALDKFGVDFIAVNKGTNKSPKWDLFAIEINLRRGGTTHPFMTLKLLTNGSYDYETGLFY CCCHHHCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEE SQHGPAKFYKATDNLQKICYRGLLPNDLMDIVAFNRLHFDSSTETGTLFHMMGCLSQFGK CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHC LGLTSIGNSPKQAEEVYQKVVDTLDNETVGNNKSWGLPTTNTISWNSSI CCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCC >Mature Secondary Structure TKLDTANREKALLFRELQTHLCDRWQNIDLPDQGDSDILIIPSVSLDQRELLKIQGAHN CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHEECCCCC YEERHLFSLIRLRNPRTRLIYVTSEPLHPSIIDYYLQLLPGIPFSHARDRLLLFATYDAS HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC SRPLTEKILERPRLIERIHLALRQEKSYMVCYNCTPLERELSVHLGIPLLGTDPDLSYWG CCCHHHHHHHCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCEEECCCCCCCCCC TKSGSRQIFTECNIPHPDGSELVWNVDDLALVTSQLWERQPHLQRIVIKLNEGFSGEGNA CCCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCE LLDLQPLQKVGKSDRVKAILNSFRTLRFQSVDETWENFSKRIFELGAIAEAFIEGDVKRS EEEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PSVQARITPKGEVEIISTHDQILGGPDGQIFIGCRFPADEAYRLNLQNLGIKIGKVLARK CCCEEEECCCCCEEEEECCHHHCCCCCCEEEEEEECCCCCCEEEEHHHCCHHHHHHHHHC GALDKFGVDFIAVNKGTNKSPKWDLFAIEINLRRGGTTHPFMTLKLLTNGSYDYETGLFY CCCHHHCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEE SQHGPAKFYKATDNLQKICYRGLLPNDLMDIVAFNRLHFDSSTETGTLFHMMGCLSQFGK CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHC LGLTSIGNSPKQAEEVYQKVVDTLDNETVGNNKSWGLPTTNTISWNSSI CCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA