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The map label for this gene is csd [H]

Identifier: 113474088

GI number: 113474088

Start: 275667

End: 276845

Strand: Reverse

Name: csd [H]

Synonym: Tery_0185

Alternate gene names: 113474088

Gene position: 276845-275667 (Counterclockwise)

Preceding gene: 113474093

Following gene: 113474087

Centisome position: 3.57

GC content: 32.99

Gene sequence:

>1179_bases
ATGGATCAGAAGATTTCTCAATTGTCAAGTTATCGACAAAACTTTCCGGCTTTAGCTAATAAAAATTATTTTAATTATGG
TGGTCAAGGACCTATGCCTAAAATATCTTTAGAGGCAATTTATGATTCTTATCAAAAAGTACAAAATTTCGGACCTTTTT
CTGGAAAAATTGGTAAGTGGGTGGTTAATGAAGCAGCTTTAATGCGAAGAGCGATCGCTACTGAGTTAGGAGTTTCTCCA
GATACTATTGCTTTGACACCAAATGTTACTGTAGGTTGTAATATTTCACTTTGGGGTTTAAATTGGCAGGAGGGAGATCA
TATCTTACTTTCTGACTGTGAACATCCGGGAATTATTGCTACAATTAAGGAGATTCAAAGACGTTTTAATATAGAGGTTT
CTACTTGTCCAATAATGGAAACCTTGAATAAAGGAAACCCTGTAACAGTAATTAAAGAAAATTTACGTCAGAATACAAAG
TTATTGGTAATCAGTCATATTTTGTGGAATACAGGTCAGGTTTTACCATTAACTGAAATTGTTAAATTGTGCCATTCTTT
ATTTAAATCTCCAATTAAAGTTTTAGCTGATGCTGCTCAATCTGTAGGAGTTTTACCTTTACAATTAGCAGAAACAGAGG
TAGATTTTTATGCTTTTACTGGTCATAAATGGTGGTGCGGACCAGAAGGTTTAGGGGGACTTTATGTAAGTCCTAAAGTT
AGGGAAAGTTTAATTCCTACTTTTATTGGTTTGGGGAGTATTTTGAGAGATAAAGTTGATCAAATAATTGGCTGGAAACC
TGATGGTAGACGTTATGAAGTTTCTACTTCTGCTTATCCTTTATATTCTGGTTTAAGGCAAGCAATAAGTCTACATAATC
AATGGGGAAATGCAATAGAAAGGTATGATAGAATTCAAAGGTTAAGTAAATATTTATGGGATAATTTAATCAAAATTCCT
GAAGTTAAATGTTTATCCACATCACCGCCAGAAGCTGGATTAGTTTCTTTTCAAGTAACTAATGGTAAATCACATCAAGA
GTTAGTGAATTTTTTAGAAAACCAGGATATTATGGTGCGAACTATTATTAACCCAGATTGTGTGAGAGCTTCTATTCATT
ATTTTAGTTTAGAGGCAGAAATTGATAAATTAGTTGCAGAAATTAAAGCTTTTATTTGA

Upstream 100 bases:

>100_bases
ATTATAAGGTTTATTTTTATCTATCTAATTATTTAAATTAATTAACATTTATGATATAATTAAAGACCGTATAATTTTGC
TATTTATCTTCAAAAAAATT

Downstream 100 bases:

>100_bases
ATAAGTTAGTAGGGGAGTAAGGGTAGGGGGGTTGTATAAAACTTCCCTACGACATAAGAATAATTAATATTCACTTAGCT
AAACAAAGAAGAAGTTTATT

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MDQKISQLSSYRQNFPALANKNYFNYGGQGPMPKISLEAIYDSYQKVQNFGPFSGKIGKWVVNEAALMRRAIATELGVSP
DTIALTPNVTVGCNISLWGLNWQEGDHILLSDCEHPGIIATIKEIQRRFNIEVSTCPIMETLNKGNPVTVIKENLRQNTK
LLVISHILWNTGQVLPLTEIVKLCHSLFKSPIKVLADAAQSVGVLPLQLAETEVDFYAFTGHKWWCGPEGLGGLYVSPKV
RESLIPTFIGLGSILRDKVDQIIGWKPDGRRYEVSTSAYPLYSGLRQAISLHNQWGNAIERYDRIQRLSKYLWDNLIKIP
EVKCLSTSPPEAGLVSFQVTNGKSHQELVNFLENQDIMVRTIINPDCVRASIHYFSLEAEIDKLVAEIKAFI

Sequences:

>Translated_392_residues
MDQKISQLSSYRQNFPALANKNYFNYGGQGPMPKISLEAIYDSYQKVQNFGPFSGKIGKWVVNEAALMRRAIATELGVSP
DTIALTPNVTVGCNISLWGLNWQEGDHILLSDCEHPGIIATIKEIQRRFNIEVSTCPIMETLNKGNPVTVIKENLRQNTK
LLVISHILWNTGQVLPLTEIVKLCHSLFKSPIKVLADAAQSVGVLPLQLAETEVDFYAFTGHKWWCGPEGLGGLYVSPKV
RESLIPTFIGLGSILRDKVDQIIGWKPDGRRYEVSTSAYPLYSGLRQAISLHNQWGNAIERYDRIQRLSKYLWDNLIKIP
EVKCLSTSPPEAGLVSFQVTNGKSHQELVNFLENQDIMVRTIINPDCVRASIHYFSLEAEIDKLVAEIKAFI
>Mature_392_residues
MDQKISQLSSYRQNFPALANKNYFNYGGQGPMPKISLEAIYDSYQKVQNFGPFSGKIGKWVVNEAALMRRAIATELGVSP
DTIALTPNVTVGCNISLWGLNWQEGDHILLSDCEHPGIIATIKEIQRRFNIEVSTCPIMETLNKGNPVTVIKENLRQNTK
LLVISHILWNTGQVLPLTEIVKLCHSLFKSPIKVLADAAQSVGVLPLQLAETEVDFYAFTGHKWWCGPEGLGGLYVSPKV
RESLIPTFIGLGSILRDKVDQIIGWKPDGRRYEVSTSAYPLYSGLRQAISLHNQWGNAIERYDRIQRLSKYLWDNLIKIP
EVKCLSTSPPEAGLVSFQVTNGKSHQELVNFLENQDIMVRTIINPDCVRASIHYFSLEAEIDKLVAEIKAFI

Specific function: Cysteine Desulfurases Mobilize The Sulfur From L- Cysteine To Yield L-Alanine, An Essential Step In Sulfur Metabolism For Biosynthesis Of A Variety Of Sulfur-Containing Biomolecules. Component Of The Suf Operon, Which Is Activated And Required Under Speci

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Homo sapiens, GI32307132, Length=271, Percent_Identity=25.4612546125461, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1787970, Length=332, Percent_Identity=28.3132530120482, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI48994898, Length=347, Percent_Identity=26.2247838616715, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1789175, Length=406, Percent_Identity=23.1527093596059, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI20129463, Length=187, Percent_Identity=28.8770053475936, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 43970; Mature: 43970

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00595 AA_TRANSFER_CLASS_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQKISQLSSYRQNFPALANKNYFNYGGQGPMPKISLEAIYDSYQKVQNFGPFSGKIGKW
CCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
VVNEAALMRRAIATELGVSPDTIALTPNVTVGCNISLWGLNWQEGDHILLSDCEHPGIIA
HHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECEEEEEECCCCCCCEEEEECCCCCCHHH
TIKEIQRRFNIEVSTCPIMETLNKGNPVTVIKENLRQNTKLLVISHILWNTGQVLPLTEI
HHHHHHHHHCCCEECCHHHHHHCCCCCEEEEHHHHHCCCEEEEEEHHHHCCCCCCCHHHH
VKLCHSLFKSPIKVLADAAQSVGVLPLQLAETEVDFYAFTGHKWWCGPEGLGGLYVSPKV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCEEEECCCCCCCEEECHHH
RESLIPTFIGLGSILRDKVDQIIGWKPDGRRYEVSTSAYPLYSGLRQAISLHNQWGNAIE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
RYDRIQRLSKYLWDNLIKIPEVKCLSTSPPEAGLVSFQVTNGKSHQELVNFLENQDIMVR
HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEE
TIINPDCVRASIHYFSLEAEIDKLVAEIKAFI
EECCCHHHHEEEHEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQKISQLSSYRQNFPALANKNYFNYGGQGPMPKISLEAIYDSYQKVQNFGPFSGKIGKW
CCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
VVNEAALMRRAIATELGVSPDTIALTPNVTVGCNISLWGLNWQEGDHILLSDCEHPGIIA
HHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECEEEEEECCCCCCCEEEEECCCCCCHHH
TIKEIQRRFNIEVSTCPIMETLNKGNPVTVIKENLRQNTKLLVISHILWNTGQVLPLTEI
HHHHHHHHHCCCEECCHHHHHHCCCCCEEEEHHHHHCCCEEEEEEHHHHCCCCCCCHHHH
VKLCHSLFKSPIKVLADAAQSVGVLPLQLAETEVDFYAFTGHKWWCGPEGLGGLYVSPKV
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCEEEECCCCCCCEEECHHH
RESLIPTFIGLGSILRDKVDQIIGWKPDGRRYEVSTSAYPLYSGLRQAISLHNQWGNAIE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
RYDRIQRLSKYLWDNLIKIPEVKCLSTSPPEAGLVSFQVTNGKSHQELVNFLENQDIMVR
HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEEEE
TIINPDCVRASIHYFSLEAEIDKLVAEIKAFI
EECCCHHHHEEEHEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]