| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474083
Identifier: 113474083
GI number: 113474083
Start: 266150
End: 266914
Strand: Reverse
Name: 113474083
Synonym: Tery_0179
Alternate gene names: NA
Gene position: 266914-266150 (Counterclockwise)
Preceding gene: 113474087
Following gene: 113474080
Centisome position: 3.44
GC content: 40.13
Gene sequence:
>765_bases ATGCCTAGAAAACCACGTCAACTTTTGCCTCAATATTCCGATCATGTTACTTGTCGTTGCAACAACCGAGAGTTTCGTTT GACTCGTCTCCAATGTCGTCAGGTTTTTTTGTTTGCCTTAAAAAAAGCTTTGGATAAGTTTGGCTTTAAACTTTATGCTC TATGCATTATGAGTAACCATATTCATTATTTACTAGAGCCATCCATTCGGGAAGACTTACCGAAAATTATGCACTGGTTA AACTGGTATACGGCTATGTGTTTTAATCAAATGCTTAACCGTACCGGGCATTTTTGGGAGAAGAGATACCATAGTACCGG GTTTGAAAATACTGATAAAAAACGAGCTTTGAATACTCTTCGCTATATTCACGCTAACCCAAAAGCAGCTAATATGCAGT CTGGGTTTTTCTATGACTTTTCTAACTATGGCACTTATGACCGCCTCACTGATGATGGTCTCACAAAGTGGCATCCTGCT TTTTTGTCTCTGGGAAAAACTCTTGATGAATGTGCTAAAAACTATAGGAAATTTTGTCACAAATACAAACCTCGACCAAA ACCGGAAAAGCGTAGTCGTTGGGGTAGTAGGTTTTTGCCTAAGGTGAAAAAAAAGAAAAAGAATAAGGTTTCTCCAGGAC AAATGCGACTTCCTTGGGCAGACTGGGAACCTCCCTCAAATTTGGTGGCGGAGGTAGCCAGGCAGTTTGTTTTGGCAAAT TGTTATGACCCGGAGGCGGCTATGAAATTTTTCGATGATCAGTAA
Upstream 100 bases:
>100_bases ACGCACTCACCCTGATAATGTTTTGCCGCAGAACCGGGGGAAACTTAACATATTTAATTCTGTTGGGTTTCAAATATATC CGACTATCTCTTAACTGATA
Downstream 100 bases:
>100_bases TGACATATCGCAGTGTGGCCAAAATTAAAGTGTTTAGTTAATTTTTAAACCTAAAACCTAAAAACTAACACTTAAAACCA TTAACCTAATACCTAATACC
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives; Conserved Domain Protein
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MPRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNHIHYLLEPSIREDLPKIMHWL NWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTLRYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPA FLSLGKTLDECAKNYRKFCHKYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN CYDPEAAMKFFDDQ
Sequences:
>Translated_254_residues MPRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNHIHYLLEPSIREDLPKIMHWL NWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTLRYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPA FLSLGKTLDECAKNYRKFCHKYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN CYDPEAAMKFFDDQ >Mature_253_residues PRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNHIHYLLEPSIREDLPKIMHWLN WYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTLRYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPAF LSLGKTLDECAKNYRKFCHKYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLANC YDPEAAMKFFDDQ
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30362; Mature: 30231
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNH CCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IHYLLEPSIREDLPKIMHWLNWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTL HHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPAFLSLGKTLDECAKNYRKFCH HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC CYDPEAAMKFFDDQ CCCHHHHHHHHCCC >Mature Secondary Structure PRKPRQLLPQYSDHVTCRCNNREFRLTRLQCRQVFLFALKKALDKFGFKLYALCIMSNH CCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IHYLLEPSIREDLPKIMHWLNWYTAMCFNQMLNRTGHFWEKRYHSTGFENTDKKRALNTL HHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RYIHANPKAANMQSGFFYDFSNYGTYDRLTDDGLTKWHPAFLSLGKTLDECAKNYRKFCH HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KYKPRPKPEKRSRWGSRFLPKVKKKKKNKVSPGQMRLPWADWEPPSNLVAEVARQFVLAN HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC CYDPEAAMKFFDDQ CCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA