| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113474076
Identifier: 113474076
GI number: 113474076
Start: 256583
End: 257716
Strand: Reverse
Name: 113474076
Synonym: Tery_0172
Alternate gene names: NA
Gene position: 257716-256583 (Counterclockwise)
Preceding gene: 113474080
Following gene: 113474070
Centisome position: 3.33
GC content: 36.77
Gene sequence:
>1134_bases ATGACTTTCGCCGAAGCACTGGCACAAGAGTGGAGAACTAGACTTCAAGAAGACTACCCAAACCATAGCTCAGATGTCCA CAATAGTATTATTTGTTGGCTATTGGGAAATGATTCTAATAAGTTAGATAGCTTTACTCCTGTCCAAAAAGAAATAACAT CTCAAGGAAGAGAATTTCTTTATAGAATTCTAGGACAAAGATATTTGGAAGCTTCACCAGAACAAGCTTATCAAAACTTG ATGCAGCGCTTGAGTGGTTTAGTGATGCTGCGAGAAAAAATACGAGCATGGGTAAGTACTAGTCGCGATCGCCAGCGAAG TGCAATTGATGTTCTCCAAGAAGTAGTCCAAGATATGTTAAATAGCGATCGCTACCTACAACAGCAAATGGCCAATATTG CCGAATGTACAAAAAATCCCCATCTCCGAAACTCTTTATTGTTGGCCAGTGTAGAAGAGTATTGTGTCAGACCAATTCGT AATCAACCTTTACTGGTTTATAGATTTGTTAATTATCTACGTCGGACTCAAAAAGGTGGTTTAACTCAAGTACCTGTCAA AGAATGGGTAAAATTCATCTCAGACGATATTAGTTATGGTGATACCGAAGATAAAGTAAGCTTCTTGGACACTGTGGTCA CATCAGAGTATAACGATGGGGAAACAATAGAAAAATATCAACTTCGGTCTAAAGTCCTAGAAGAATTTGAGAAATATTTA GCAGAAAAAGTTGATCAAAAGGCCGTAGAATGGCTAAGACTTTATATTAGAGGCAATACTCAGTATGAAATTGCTAAAGC TTTAAATATCCCCGTTCAAAAGATATATAGGCTACGAGAAAAAGTTAGTTATCATGCAATTCGCGTTTTTGCACTCAAGC AACAACCAGAATTAATAGCTAGTTGGCTAGAAATTTCTCTCAATGATAATAGCCTAGGTTTGACTCCTAGTAAATGGCGA GAATATTGGCAAAATCTCAATCATCAACAACGTCATTTAGTTGAAGCTTTAAAGTCAGGTGCAACTCTAGAGGAAATAGC TAAAGAGTTAAACCTAAAAACTAATCAAGTTATTAGTGAATGGACTCAATTATATTTGGATGCTCAATCTTTACGGAACA GTTCTAAAAGCTGA
Upstream 100 bases:
>100_bases GTAAAATAACTGAAAATATCAACTTTAGCAAAATTTGGCAGAGGTTAACTCCCTCCATTAGCCCATTAGCTAAAATTGAA TATCTAGAATCAAAAATATA
Downstream 100 bases:
>100_bases TTTCTCAAAAAACTAAATAAAGTTTATTCCTAGTAAATAATGGTGTACTTTAGCAGTATTTATTATGATAAATAAACTAT GTCATCAGTTAGGATTAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFLYRILGQRYLEASPEQAYQNL MQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDMLNSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIR NQPLLVYRFVNYLRRTQKGGLTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIASWLEISLNDNSLGLTPSKWR EYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISEWTQLYLDAQSLRNSSKS
Sequences:
>Translated_377_residues MTFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFLYRILGQRYLEASPEQAYQNL MQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDMLNSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIR NQPLLVYRFVNYLRRTQKGGLTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIASWLEISLNDNSLGLTPSKWR EYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISEWTQLYLDAQSLRNSSKS >Mature_376_residues TFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFLYRILGQRYLEASPEQAYQNLM QRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDMLNSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIRN QPLLVYRFVNYLRRTQKGGLTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYLA EKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIASWLEISLNDNSLGLTPSKWRE YWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISEWTQLYLDAQSLRNSSKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44204; Mature: 44072
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFL CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH YRILGQRYLEASPEQAYQNLMQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDML HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH NSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIRNQPLLVYRFVNYLRRTQKGG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC LTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIA HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SWLEISLNDNSLGLTPSKWREYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISE HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH WTQLYLDAQSLRNSSKS HHHHHHHHHHHCCCCCC >Mature Secondary Structure TFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFL CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH YRILGQRYLEASPEQAYQNLMQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDML HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH NSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIRNQPLLVYRFVNYLRRTQKGG CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC LTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIA HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SWLEISLNDNSLGLTPSKWREYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISE HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH WTQLYLDAQSLRNSSKS HHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA