Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474076

Identifier: 113474076

GI number: 113474076

Start: 256583

End: 257716

Strand: Reverse

Name: 113474076

Synonym: Tery_0172

Alternate gene names: NA

Gene position: 257716-256583 (Counterclockwise)

Preceding gene: 113474080

Following gene: 113474070

Centisome position: 3.33

GC content: 36.77

Gene sequence:

>1134_bases
ATGACTTTCGCCGAAGCACTGGCACAAGAGTGGAGAACTAGACTTCAAGAAGACTACCCAAACCATAGCTCAGATGTCCA
CAATAGTATTATTTGTTGGCTATTGGGAAATGATTCTAATAAGTTAGATAGCTTTACTCCTGTCCAAAAAGAAATAACAT
CTCAAGGAAGAGAATTTCTTTATAGAATTCTAGGACAAAGATATTTGGAAGCTTCACCAGAACAAGCTTATCAAAACTTG
ATGCAGCGCTTGAGTGGTTTAGTGATGCTGCGAGAAAAAATACGAGCATGGGTAAGTACTAGTCGCGATCGCCAGCGAAG
TGCAATTGATGTTCTCCAAGAAGTAGTCCAAGATATGTTAAATAGCGATCGCTACCTACAACAGCAAATGGCCAATATTG
CCGAATGTACAAAAAATCCCCATCTCCGAAACTCTTTATTGTTGGCCAGTGTAGAAGAGTATTGTGTCAGACCAATTCGT
AATCAACCTTTACTGGTTTATAGATTTGTTAATTATCTACGTCGGACTCAAAAAGGTGGTTTAACTCAAGTACCTGTCAA
AGAATGGGTAAAATTCATCTCAGACGATATTAGTTATGGTGATACCGAAGATAAAGTAAGCTTCTTGGACACTGTGGTCA
CATCAGAGTATAACGATGGGGAAACAATAGAAAAATATCAACTTCGGTCTAAAGTCCTAGAAGAATTTGAGAAATATTTA
GCAGAAAAAGTTGATCAAAAGGCCGTAGAATGGCTAAGACTTTATATTAGAGGCAATACTCAGTATGAAATTGCTAAAGC
TTTAAATATCCCCGTTCAAAAGATATATAGGCTACGAGAAAAAGTTAGTTATCATGCAATTCGCGTTTTTGCACTCAAGC
AACAACCAGAATTAATAGCTAGTTGGCTAGAAATTTCTCTCAATGATAATAGCCTAGGTTTGACTCCTAGTAAATGGCGA
GAATATTGGCAAAATCTCAATCATCAACAACGTCATTTAGTTGAAGCTTTAAAGTCAGGTGCAACTCTAGAGGAAATAGC
TAAAGAGTTAAACCTAAAAACTAATCAAGTTATTAGTGAATGGACTCAATTATATTTGGATGCTCAATCTTTACGGAACA
GTTCTAAAAGCTGA

Upstream 100 bases:

>100_bases
GTAAAATAACTGAAAATATCAACTTTAGCAAAATTTGGCAGAGGTTAACTCCCTCCATTAGCCCATTAGCTAAAATTGAA
TATCTAGAATCAAAAATATA

Downstream 100 bases:

>100_bases
TTTCTCAAAAAACTAAATAAAGTTTATTCCTAGTAAATAATGGTGTACTTTAGCAGTATTTATTATGATAAATAAACTAT
GTCATCAGTTAGGATTAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFLYRILGQRYLEASPEQAYQNL
MQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDMLNSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIR
NQPLLVYRFVNYLRRTQKGGLTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL
AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIASWLEISLNDNSLGLTPSKWR
EYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISEWTQLYLDAQSLRNSSKS

Sequences:

>Translated_377_residues
MTFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFLYRILGQRYLEASPEQAYQNL
MQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDMLNSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIR
NQPLLVYRFVNYLRRTQKGGLTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL
AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIASWLEISLNDNSLGLTPSKWR
EYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISEWTQLYLDAQSLRNSSKS
>Mature_376_residues
TFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFLYRILGQRYLEASPEQAYQNLM
QRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDMLNSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIRN
QPLLVYRFVNYLRRTQKGGLTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYLA
EKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIASWLEISLNDNSLGLTPSKWRE
YWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISEWTQLYLDAQSLRNSSKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44204; Mature: 44072

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFL
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
YRILGQRYLEASPEQAYQNLMQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDML
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
NSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIRNQPLLVYRFVNYLRRTQKGG
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
LTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SWLEISLNDNSLGLTPSKWREYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISE
HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH
WTQLYLDAQSLRNSSKS
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TFAEALAQEWRTRLQEDYPNHSSDVHNSIICWLLGNDSNKLDSFTPVQKEITSQGREFL
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
YRILGQRYLEASPEQAYQNLMQRLSGLVMLREKIRAWVSTSRDRQRSAIDVLQEVVQDML
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
NSDRYLQQQMANIAECTKNPHLRNSLLLASVEEYCVRPIRNQPLLVYRFVNYLRRTQKGG
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
LTQVPVKEWVKFISDDISYGDTEDKVSFLDTVVTSEYNDGETIEKYQLRSKVLEEFEKYL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AEKVDQKAVEWLRLYIRGNTQYEIAKALNIPVQKIYRLREKVSYHAIRVFALKQQPELIA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SWLEISLNDNSLGLTPSKWREYWQNLNHQQRHLVEALKSGATLEEIAKELNLKTNQVISE
HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHH
WTQLYLDAQSLRNSSKS
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA