| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474052
Identifier: 113474052
GI number: 113474052
Start: 212926
End: 214536
Strand: Reverse
Name: 113474052
Synonym: Tery_0145
Alternate gene names: NA
Gene position: 214536-212926 (Counterclockwise)
Preceding gene: 113474053
Following gene: 113474047
Centisome position: 2.77
GC content: 36.13
Gene sequence:
>1611_bases ATGAAAAAAAAGATTTACAACTCCAAAGTTAGTTACATACAAGAGAAATCTCCTAAGGCTTTTCAAACAGTTGAGAAAAA CTATTATCCTAGAACTAGAAAAGCTACACAAATTAGTCAAATTACCTCTACTACAAAATCTAGGAGACGTCGCAGACGAC CATCTCAGTCTCAAAAACTTTCGTTGAAATTGCTATCTTTACCTTGGCGGAAATGGATAATTGAATGGATAGGAATTACT TTGTTATTTGGTGGTTCTAGTTTAATGGCAGTGGGAGCATGGCTTAGTGTCAAGTTAATTTCTGATCCAAACGCTATGGT CTTATTCAATCAAATATTACCACAATGGACTCAATTCTACATATCTGGGAATAAATCTTTAAAAACTCTTGAGCAAATTA AATCTAATATTAAAGAAGAAGGGTTTAGCTCTGGAAAAACTTTTTCTCTTCCTAATAAAACAACAGATTCTAGTTCAGAT CTATTAGTGCCAGTAATGAAGCAAATTGAATCTAGAGCATCTTTGCCCTGTGAAACTCCCTGTCGGGAAGTAGTAGAATT GCGGGTCTATCAATCAGTTTTATCTGTTAATCAACGAGAAGGCAGTAAACCATATTTTCGATTAGTTAATAAATTACCAC TAGAAGGTCCGGCTGAATCTTTTGTAATTGAATCTACTATTGAATCTGCTTCTGCTCTTCTAGGTTCAAATCAACCTTTA CCTATAACAACAGTACGTCAGTTTCAAGGCAAAGTTCCTGCCTCAGGAGTTTGGTTTACTGTCAGTGGTCAGAGATTACA AAATAATAAAGCTATTCCTTATGGGCAAATTATTAATTATAATCCCACTAGAAATTACTTAAGTTCCATGTTGGAGTGGA AAAGTGCTGCTGGTCAAGCTCCGATCTGGCAGGAAATGACTGGTGGGGAAGATCCAGAACTAGTGATCGAGCAAACTGTG GGGTTAGATCCTAATTTTGATATTTATTGGATTCAACCGCGAAAGTTTATACTTAATCCCATTGAGTTGGAGAAAATTTC CCTTGATGAAACTCCTATTGGGGATGCATATTATAGAGATGCTCTGGGGTTAGCTCGTAATGGTTTATGGTCTCCTGCTT TTCCTTTAATTGAACCTTTGCGAAAGAATTTAATAAATAAATCTAAATGGTCGAAAAAGGCACAAGCTCAGTTTGATTTG ATTAAGTTTCATGCCAATATTACAGAAGCTCAGGCGATCGCCTCCTGGGCAAGCCCAAGTCAAAAAGTTTTAGCTGGTTT AATAGATGGTCGTTGGCAACAAAGTCTAGATGTGTTTGAAAATAATTTGAGCAGCAATTATGATATTGCTAAATTACTGC AAAATGATACTGGTCGTCTCCGCAAAAGAGTTGACGCAACTATTAAAGTAAATAGAGAGGAAATGAATGCGATAGCTTGG GGTACTCTAATTGTCGCAAGTCAAAAAGGCCGAAAAAGGGCAATGTCATGGTTAAATAAACAACCATCTACTAGCAAACA GGCAAAGGAAAAGATTGAAAAATTATTGGATCAACTAGATGCTGCTTTTGTAAAAGAGGAGAATATATACAAAAATCAAA TTCAGCGATGA
Upstream 100 bases:
>100_bases AGTTAAGACAAACGTTGTCAGAAAACGGGCGATCACTGGTAGAAACCGAGTATACTTGGAAAATTCAAGGTCAGCGGTAT GAAAGGGTATTACTAGGATA
Downstream 100 bases:
>100_bases GAGTTGTTACGGCAGAATTCAAAAGTCAGAATTTATAACGCAGAAGGTGGGAAGTTAAAGTTGTCCAATGAAATTGGAAT AATTCCGAGAAAATAGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 536; Mature: 536
Protein sequence:
>536_residues MKKKIYNSKVSYIQEKSPKAFQTVEKNYYPRTRKATQISQITSTTKSRRRRRRPSQSQKLSLKLLSLPWRKWIIEWIGIT LLFGGSSLMAVGAWLSVKLISDPNAMVLFNQILPQWTQFYISGNKSLKTLEQIKSNIKEEGFSSGKTFSLPNKTTDSSSD LLVPVMKQIESRASLPCETPCREVVELRVYQSVLSVNQREGSKPYFRLVNKLPLEGPAESFVIESTIESASALLGSNQPL PITTVRQFQGKVPASGVWFTVSGQRLQNNKAIPYGQIINYNPTRNYLSSMLEWKSAAGQAPIWQEMTGGEDPELVIEQTV GLDPNFDIYWIQPRKFILNPIELEKISLDETPIGDAYYRDALGLARNGLWSPAFPLIEPLRKNLINKSKWSKKAQAQFDL IKFHANITEAQAIASWASPSQKVLAGLIDGRWQQSLDVFENNLSSNYDIAKLLQNDTGRLRKRVDATIKVNREEMNAIAW GTLIVASQKGRKRAMSWLNKQPSTSKQAKEKIEKLLDQLDAAFVKEENIYKNQIQR
Sequences:
>Translated_536_residues MKKKIYNSKVSYIQEKSPKAFQTVEKNYYPRTRKATQISQITSTTKSRRRRRRPSQSQKLSLKLLSLPWRKWIIEWIGIT LLFGGSSLMAVGAWLSVKLISDPNAMVLFNQILPQWTQFYISGNKSLKTLEQIKSNIKEEGFSSGKTFSLPNKTTDSSSD LLVPVMKQIESRASLPCETPCREVVELRVYQSVLSVNQREGSKPYFRLVNKLPLEGPAESFVIESTIESASALLGSNQPL PITTVRQFQGKVPASGVWFTVSGQRLQNNKAIPYGQIINYNPTRNYLSSMLEWKSAAGQAPIWQEMTGGEDPELVIEQTV GLDPNFDIYWIQPRKFILNPIELEKISLDETPIGDAYYRDALGLARNGLWSPAFPLIEPLRKNLINKSKWSKKAQAQFDL IKFHANITEAQAIASWASPSQKVLAGLIDGRWQQSLDVFENNLSSNYDIAKLLQNDTGRLRKRVDATIKVNREEMNAIAW GTLIVASQKGRKRAMSWLNKQPSTSKQAKEKIEKLLDQLDAAFVKEENIYKNQIQR >Mature_536_residues MKKKIYNSKVSYIQEKSPKAFQTVEKNYYPRTRKATQISQITSTTKSRRRRRRPSQSQKLSLKLLSLPWRKWIIEWIGIT LLFGGSSLMAVGAWLSVKLISDPNAMVLFNQILPQWTQFYISGNKSLKTLEQIKSNIKEEGFSSGKTFSLPNKTTDSSSD LLVPVMKQIESRASLPCETPCREVVELRVYQSVLSVNQREGSKPYFRLVNKLPLEGPAESFVIESTIESASALLGSNQPL PITTVRQFQGKVPASGVWFTVSGQRLQNNKAIPYGQIINYNPTRNYLSSMLEWKSAAGQAPIWQEMTGGEDPELVIEQTV GLDPNFDIYWIQPRKFILNPIELEKISLDETPIGDAYYRDALGLARNGLWSPAFPLIEPLRKNLINKSKWSKKAQAQFDL IKFHANITEAQAIASWASPSQKVLAGLIDGRWQQSLDVFENNLSSNYDIAKLLQNDTGRLRKRVDATIKVNREEMNAIAW GTLIVASQKGRKRAMSWLNKQPSTSKQAKEKIEKLLDQLDAAFVKEENIYKNQIQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60863; Mature: 60863
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKIYNSKVSYIQEKSPKAFQTVEKNYYPRTRKATQISQITSTTKSRRRRRRPSQSQKL CCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH SLKLLSLPWRKWIIEWIGITLLFGGSSLMAVGAWLSVKLISDPNAMVLFNQILPQWTQFY HHHHHHCCHHHHHHHHHHHHHEECCCHHHHHHHEEEEEEECCCCCEEHHHHHHHHHHHHH ISGNKSLKTLEQIKSNIKEEGFSSGKTFSLPNKTTDSSSDLLVPVMKQIESRASLPCETP HCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCH CREVVELRVYQSVLSVNQREGSKPYFRLVNKLPLEGPAESFVIESTIESASALLGSNQPL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC PITTVRQFQGKVPASGVWFTVSGQRLQNNKAIPYGQIINYNPTRNYLSSMLEWKSAAGQA CCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC PIWQEMTGGEDPELVIEQTVGLDPNFDIYWIQPRKFILNPIELEKISLDETPIGDAYYRD CCHHHHCCCCCCCCHHHHHCCCCCCCCEEEECCHHHHCCCEEEEEEECCCCCCCHHHHHH ALGLARNGLWSPAFPLIEPLRKNLINKSKWSKKAQAQFDLIKFHANITEAQAIASWASPS HHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH QKVLAGLIDGRWQQSLDVFENNLSSNYDIAKLLQNDTGRLRKRVDATIKVNREEMNAIAW HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCHHEEECHHHHHHHHH GTLIVASQKGRKRAMSWLNKQPSTSKQAKEKIEKLLDQLDAAFVKEENIYKNQIQR HEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC >Mature Secondary Structure MKKKIYNSKVSYIQEKSPKAFQTVEKNYYPRTRKATQISQITSTTKSRRRRRRPSQSQKL CCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH SLKLLSLPWRKWIIEWIGITLLFGGSSLMAVGAWLSVKLISDPNAMVLFNQILPQWTQFY HHHHHHCCHHHHHHHHHHHHHEECCCHHHHHHHEEEEEEECCCCCEEHHHHHHHHHHHHH ISGNKSLKTLEQIKSNIKEEGFSSGKTFSLPNKTTDSSSDLLVPVMKQIESRASLPCETP HCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCH CREVVELRVYQSVLSVNQREGSKPYFRLVNKLPLEGPAESFVIESTIESASALLGSNQPL HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC PITTVRQFQGKVPASGVWFTVSGQRLQNNKAIPYGQIINYNPTRNYLSSMLEWKSAAGQA CCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC PIWQEMTGGEDPELVIEQTVGLDPNFDIYWIQPRKFILNPIELEKISLDETPIGDAYYRD CCHHHHCCCCCCCCHHHHHCCCCCCCCEEEECCHHHHCCCEEEEEEECCCCCCCHHHHHH ALGLARNGLWSPAFPLIEPLRKNLINKSKWSKKAQAQFDLIKFHANITEAQAIASWASPS HHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCH QKVLAGLIDGRWQQSLDVFENNLSSNYDIAKLLQNDTGRLRKRVDATIKVNREEMNAIAW HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCHHEEECHHHHHHHHH GTLIVASQKGRKRAMSWLNKQPSTSKQAKEKIEKLLDQLDAAFVKEENIYKNQIQR HEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA