| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yedI [H]
Identifier: 110835565
GI number: 110835565
Start: 3057927
End: 3058859
Strand: Reverse
Name: yedI [H]
Synonym: ABO_2704
Alternate gene names: 110835565
Gene position: 3058859-3057927 (Counterclockwise)
Preceding gene: 110835566
Following gene: 110835563
Centisome position: 98.04
GC content: 45.02
Gene sequence:
>933_bases GTGGCAGGAACAAGTTTACTGATGTTGCTGGATGACATCGCCGCAGTGCTTGATGACGTGTCGGTGATGACCAAGGTGGC AGCCAAGAAAACCGCAGGGGTGCTGGGCGATGACTTGGCGTTAAATGCGGAGCAGGCATCGGGCGTGCGTGCAGAACGCG AGCTTCCTGTGGTGTGGGCCGTGGCTAAAGGTTCCATGCGCAATAAATGTATTCTGGTTCCTTCGGCGTTGTTGATCAGT GCTTTTTTGCCTTGGTTGATCACTCCATTGTTGATGTTAGGTGGCGCTTACCTGTGCTATGAAGGGGTGGAAAAACTAGC GCATAAATTTTTTCATGGAGCAGAAGAATCTCAAGAGCATAAAGAAAGAATTCAAGCCATGATTGACCCGAAAGTGGACT TGGTCTCTTTTGAAAAAAATAAAATTAAAGGGGCTGTTCGAACGGACTTTATCTTGTCTGCAGAAATTATTGTTATTGCT TTGGGAACAGTACAGGCTGCGCCTTTTTTACAGCAAATTATGGTGATAAGTCTTATCGCGGGGGCCATGACCATCGGCGT TTATGGATTGGTGGCTGGCATTGTTAAGTTAGACGATGCGGGTTTGTATTTGATTGAATCGGGTAAAGAAAAAAATGAAA AAATTCGGTCTTTTTTAGGAGGGATGCTACTTGGTTTTTCTCCTAAACTAATGAAGTTTTTATCCGTGGCAGGAACGGCT GCTATGTTCTTGGTAGGCGGGGGTATTTTGCTTCATGGCTTGCCAATGAGTCACGATACTTTGCATTATATAGACGAACT AATGGTGACCTTTCCCATGGCCGCTGTGCTAAGCGTTTTGATGCCCATGCTTGTAAATGTAGTGCTGGGCATTGTCGCTG GCAGCATTGTTTTGTTTGCAGTAAAGGGCGTTAATTTTTTGAGACAAAAATAA
Upstream 100 bases:
>100_bases GTCGGCATTGTCGCGATCACCATTAACCGGCCTAGGTTGAATTTTGTAAAGTGACTAAAAATTAGACTTCAAAAAAATTT ATTTTTTAAGGATAAATAAC
Downstream 100 bases:
>100_bases GAAAAAATTGGAAAAGCGAGAAAAAATTCTCGCTTTTCATGTGCGCTATTGAAAATAGGAAAGATATTTTCCGTAACCCT TTTGGGTCATTTCCTCCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MAGTSLLMLLDDIAAVLDDVSVMTKVAAKKTAGVLGDDLALNAEQASGVRAERELPVVWAVAKGSMRNKCILVPSALLIS AFLPWLITPLLMLGGAYLCYEGVEKLAHKFFHGAEESQEHKERIQAMIDPKVDLVSFEKNKIKGAVRTDFILSAEIIVIA LGTVQAAPFLQQIMVISLIAGAMTIGVYGLVAGIVKLDDAGLYLIESGKEKNEKIRSFLGGMLLGFSPKLMKFLSVAGTA AMFLVGGGILLHGLPMSHDTLHYIDELMVTFPMAAVLSVLMPMLVNVVLGIVAGSIVLFAVKGVNFLRQK
Sequences:
>Translated_310_residues MAGTSLLMLLDDIAAVLDDVSVMTKVAAKKTAGVLGDDLALNAEQASGVRAERELPVVWAVAKGSMRNKCILVPSALLIS AFLPWLITPLLMLGGAYLCYEGVEKLAHKFFHGAEESQEHKERIQAMIDPKVDLVSFEKNKIKGAVRTDFILSAEIIVIA LGTVQAAPFLQQIMVISLIAGAMTIGVYGLVAGIVKLDDAGLYLIESGKEKNEKIRSFLGGMLLGFSPKLMKFLSVAGTA AMFLVGGGILLHGLPMSHDTLHYIDELMVTFPMAAVLSVLMPMLVNVVLGIVAGSIVLFAVKGVNFLRQK >Mature_309_residues AGTSLLMLLDDIAAVLDDVSVMTKVAAKKTAGVLGDDLALNAEQASGVRAERELPVVWAVAKGSMRNKCILVPSALLISA FLPWLITPLLMLGGAYLCYEGVEKLAHKFFHGAEESQEHKERIQAMIDPKVDLVSFEKNKIKGAVRTDFILSAEIIVIAL GTVQAAPFLQQIMVISLIAGAMTIGVYGLVAGIVKLDDAGLYLIESGKEKNEKIRSFLGGMLLGFSPKLMKFLSVAGTAA MFLVGGGILLHGLPMSHDTLHYIDELMVTFPMAAVLSVLMPMLVNVVLGIVAGSIVLFAVKGVNFLRQK
Specific function: Unknown
COG id: COG2354
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788268, Length=314, Percent_Identity=55.7324840764331, Blast_Score=319, Evalue=1e-88,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008526 [H]
Pfam domain/function: PF05661 DUF808 [H]
EC number: NA
Molecular weight: Translated: 33150; Mature: 33019
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGTSLLMLLDDIAAVLDDVSVMTKVAAKKTAGVLGDDLALNAEQASGVRAERELPVVWA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCCCCEEEE VAKGSMRNKCILVPSALLISAFLPWLITPLLMLGGAYLCYEGVEKLAHKFFHGAEESQEH ECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH KERIQAMIDPKVDLVSFEKNKIKGAVRTDFILSAEIIVIALGTVQAAPFLQQIMVISLIA HHHHHHHHCCCCCEEECHHHHHCCHHHHHHHEEHHHHEEEECHHHHHHHHHHHHHHHHHH GAMTIGVYGLVAGIVKLDDAGLYLIESGKEKNEKIRSFLGGMLLGFSPKLMKFLSVAGTA HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AMFLVGGGILLHGLPMSHDTLHYIDELMVTFPMAAVLSVLMPMLVNVVLGIVAGSIVLFA HHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKGVNFLRQK HHHHHHHHCC >Mature Secondary Structure AGTSLLMLLDDIAAVLDDVSVMTKVAAKKTAGVLGDDLALNAEQASGVRAERELPVVWA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCCCCEEEE VAKGSMRNKCILVPSALLISAFLPWLITPLLMLGGAYLCYEGVEKLAHKFFHGAEESQEH ECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHH KERIQAMIDPKVDLVSFEKNKIKGAVRTDFILSAEIIVIALGTVQAAPFLQQIMVISLIA HHHHHHHHCCCCCEEECHHHHHCCHHHHHHHEEHHHHEEEECHHHHHHHHHHHHHHHHHH GAMTIGVYGLVAGIVKLDDAGLYLIESGKEKNEKIRSFLGGMLLGFSPKLMKFLSVAGTA HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH AMFLVGGGILLHGLPMSHDTLHYIDELMVTFPMAAVLSVLMPMLVNVVLGIVAGSIVLFA HHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKGVNFLRQK HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 2527357; 7567469 [H]