| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is zraS [H]
Identifier: 110835381
GI number: 110835381
Start: 2857627
End: 2859078
Strand: Direct
Name: zraS [H]
Synonym: ABO_2520
Alternate gene names: 110835381
Gene position: 2857627-2859078 (Clockwise)
Preceding gene: 110835380
Following gene: 110835382
Centisome position: 91.59
GC content: 47.59
Gene sequence:
>1452_bases ATGAACAGCTTGCTGGACAAAACGAGTATTGGCTTTGGCATGGAAGCTCAAGGGCTATTTTTAGTGTCCTCTACGGTCAT CCTGCTGATCATTATTTTCTTTTTGTATAAAACCTACCGCACCTCAATTAACGTGGAAGCTAAACTGACAGAGTTCTCGG CGTTAACGGATAACCCGTTCGGCCGCAAGCTGCATTTGATCGAGGTAAATGCTGACGAATACAAACTGAACAAAGCTCTA CTTGGCCCACTGGCGCGGATTATCGACGAATACTGTGTACTGACAACCGACCGCCACGGCACCATAACCTTTGCCAACGG TAAGTTTCTCGCTCTCAGCGGTCACTCTTTTTCACAACTTATCGGTCAGAACGAAAAGATCAATCATCCTGAAGATGATT CCCTACCGCTCATGCGTTGCGGGCAGGCGCTATCTGGTGTGTGGAACGGGGAGGTATGCAACCGTCATGCAGACGGTAGC CGTTACTGGATGAACATGTTCCTATTTCCTCTTTCTTACATTTCCGATGAAGACGACGGCTATATTTATTTCGGCACCGA TATCACCAACATCAAAACCGAAAACAATAAACTAATGCAGGAGGTGAAAGACAAGAGCCAAAAACTGGATCAGGTGGAAT CGCTGCTATTACACTCGGAAAAAATGGCCTCATTGGGAACCATATCGGCAGGTATTGCCCACGAAATAAATAATCCTATC GCCTATATTTCTTCCAATTTGAATCGCAGCCGGGATTACCTCAACTCCATGGCAGGTCTTATTAAGGGACTTAAAAAGCG TATCAGCAATGATCAGTTCCAGAAATTTCTAAACACTGCAGAAAACCTTAATATAGACACAAAAAAGCTGGCCTTCATGA TGGAAGATTATCCTGCACTGCTGAATGAAACCGAGGAAGGGATTGAGCGGATCAAGAAAATTATTCGCGACTTAAAGCAC TTCTCCCATAACCAGCCAGAAGCGTTCTGTCCTACCGATATTCCTGCCTGCCTAGCGATTGCATTGAACCTAGCCAAACA TGAAATTAAAAATCGGATTACGGTTACTCACACTCTACCCGATTCTCTACCTACGATTAGTGGATCGGCAAGCCAGCTGT CGCAAGTGTTCATGAATCTGTTCGTCAACGCAGCCCAGGCTATCGAAGACAAAGGTCACATCACTATTGCAGCCCAGTGC GATGAACAATGGTGCACTCTGACCATTGCCGACGATGGACCAGGCATTGCCGATGAATTCCTACAGCAGATCTTCGAACC CTTCTTCACCACCAAGCCCATAGGCCAAGGCACCGGTCTTGGGCTGTCCATCTCCCATGACATCATTCAGCACCACGGCG GCACCATGACCGTGGCAAGCCAACTCGGCGCCGGTACCATTTTTACGATCCGGCTACCGCTAAAGCAGACCGACCGGGCC GATGCAGCCTGA
Upstream 100 bases:
>100_bases AGAAACGGTTCGGGAGCAACAAGAAGCCTTGCGTAGTATGGGTTATGAGGGCTAGGCCCTTAACTTTTCGCCCTTCAAAC AACTAATAACGGCTCGGCGC
Downstream 100 bases:
>100_bases TTTCGTCTACACTCTGACCACGCCGACGGGGTGGCAACAACGCATCCGTATTTCTCTGTTAGAAGAGCACGGTGCCATTG CCATTCCCGATACGTTTACC
Product: sensor histidin kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 483; Mature: 483
Protein sequence:
>483_residues MNSLLDKTSIGFGMEAQGLFLVSSTVILLIIIFFLYKTYRTSINVEAKLTEFSALTDNPFGRKLHLIEVNADEYKLNKAL LGPLARIIDEYCVLTTDRHGTITFANGKFLALSGHSFSQLIGQNEKINHPEDDSLPLMRCGQALSGVWNGEVCNRHADGS RYWMNMFLFPLSYISDEDDGYIYFGTDITNIKTENNKLMQEVKDKSQKLDQVESLLLHSEKMASLGTISAGIAHEINNPI AYISSNLNRSRDYLNSMAGLIKGLKKRISNDQFQKFLNTAENLNIDTKKLAFMMEDYPALLNETEEGIERIKKIIRDLKH FSHNQPEAFCPTDIPACLAIALNLAKHEIKNRITVTHTLPDSLPTISGSASQLSQVFMNLFVNAAQAIEDKGHITIAAQC DEQWCTLTIADDGPGIADEFLQQIFEPFFTTKPIGQGTGLGLSISHDIIQHHGGTMTVASQLGAGTIFTIRLPLKQTDRA DAA
Sequences:
>Translated_483_residues MNSLLDKTSIGFGMEAQGLFLVSSTVILLIIIFFLYKTYRTSINVEAKLTEFSALTDNPFGRKLHLIEVNADEYKLNKAL LGPLARIIDEYCVLTTDRHGTITFANGKFLALSGHSFSQLIGQNEKINHPEDDSLPLMRCGQALSGVWNGEVCNRHADGS RYWMNMFLFPLSYISDEDDGYIYFGTDITNIKTENNKLMQEVKDKSQKLDQVESLLLHSEKMASLGTISAGIAHEINNPI AYISSNLNRSRDYLNSMAGLIKGLKKRISNDQFQKFLNTAENLNIDTKKLAFMMEDYPALLNETEEGIERIKKIIRDLKH FSHNQPEAFCPTDIPACLAIALNLAKHEIKNRITVTHTLPDSLPTISGSASQLSQVFMNLFVNAAQAIEDKGHITIAAQC DEQWCTLTIADDGPGIADEFLQQIFEPFFTTKPIGQGTGLGLSISHDIIQHHGGTMTVASQLGAGTIFTIRLPLKQTDRA DAA >Mature_483_residues MNSLLDKTSIGFGMEAQGLFLVSSTVILLIIIFFLYKTYRTSINVEAKLTEFSALTDNPFGRKLHLIEVNADEYKLNKAL LGPLARIIDEYCVLTTDRHGTITFANGKFLALSGHSFSQLIGQNEKINHPEDDSLPLMRCGQALSGVWNGEVCNRHADGS RYWMNMFLFPLSYISDEDDGYIYFGTDITNIKTENNKLMQEVKDKSQKLDQVESLLLHSEKMASLGTISAGIAHEINNPI AYISSNLNRSRDYLNSMAGLIKGLKKRISNDQFQKFLNTAENLNIDTKKLAFMMEDYPALLNETEEGIERIKKIIRDLKH FSHNQPEAFCPTDIPACLAIALNLAKHEIKNRITVTHTLPDSLPTISGSASQLSQVFMNLFVNAAQAIEDKGHITIAAQC DEQWCTLTIADDGPGIADEFLQQIFEPFFTTKPIGQGTGLGLSISHDIIQHHGGTMTVASQLGAGTIFTIRLPLKQTDRA DAA
Specific function: Member of the two-component regulatory system zraS/zraR. May function as a membrane-associated protein kinase that phosphorylates zraR in response to high concentrations of zinc or lead in the medium [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=276, Percent_Identity=31.5217391304348, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1788549, Length=266, Percent_Identity=29.6992481203008, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1788393, Length=285, Percent_Identity=25.6140350877193, Blast_Score=85, Evalue=9e-18, Organism=Escherichia coli, GI87081816, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI145693157, Length=177, Percent_Identity=29.9435028248588, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1786600, Length=147, Percent_Identity=29.2517006802721, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI48994928, Length=301, Percent_Identity=25.2491694352159, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790346, Length=182, Percent_Identity=30.2197802197802, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 53653; Mature: 53653
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLLDKTSIGFGMEAQGLFLVSSTVILLIIIFFLYKTYRTSINVEAKLTEFSALTDNPF CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC GRKLHLIEVNADEYKLNKALLGPLARIIDEYCVLTTDRHGTITFANGKFLALSGHSFSQL CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCEEEEECCCCHHHH IGQNEKINHPEDDSLPLMRCGQALSGVWNGEVCNRHADGSRYWMNMFLFPLSYISDEDDG HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC YIYFGTDITNIKTENNKLMQEVKDKSQKLDQVESLLLHSEKMASLGTISAGIAHEINNPI EEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AYISSNLNRSRDYLNSMAGLIKGLKKRISNDQFQKFLNTAENLNIDTKKLAFMMEDYPAL HHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LNETEEGIERIKKIIRDLKHFSHNQPEAFCPTDIPACLAIALNLAKHEIKNRITVTHTLP HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECC DSLPTISGSASQLSQVFMNLFVNAAQAIEDKGHITIAAQCDEQWCTLTIADDGPGIADEF CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCHHHHH LQQIFEPFFTTKPIGQGTGLGLSISHDIIQHHGGTMTVASQLGAGTIFTIRLPLKQTDRA HHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHCCCCEEEHHHCCCCEEEEEEECCCCCCCC DAA CCC >Mature Secondary Structure MNSLLDKTSIGFGMEAQGLFLVSSTVILLIIIFFLYKTYRTSINVEAKLTEFSALTDNPF CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC GRKLHLIEVNADEYKLNKALLGPLARIIDEYCVLTTDRHGTITFANGKFLALSGHSFSQL CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCEEEEECCCCHHHH IGQNEKINHPEDDSLPLMRCGQALSGVWNGEVCNRHADGSRYWMNMFLFPLSYISDEDDG HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC YIYFGTDITNIKTENNKLMQEVKDKSQKLDQVESLLLHSEKMASLGTISAGIAHEINNPI EEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AYISSNLNRSRDYLNSMAGLIKGLKKRISNDQFQKFLNTAENLNIDTKKLAFMMEDYPAL HHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH LNETEEGIERIKKIIRDLKHFSHNQPEAFCPTDIPACLAIALNLAKHEIKNRITVTHTLP HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECC DSLPTISGSASQLSQVFMNLFVNAAQAIEDKGHITIAAQCDEQWCTLTIADDGPGIADEF CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCHHHHH LQQIFEPFFTTKPIGQGTGLGLSISHDIIQHHGGTMTVASQLGAGTIFTIRLPLKQTDRA HHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHCCCCEEEHHHCCCCEEEEEEECCCCCCCC DAA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503; 2666400; 11243806 [H]