| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is luxQ [H]
Identifier: 110835378
GI number: 110835378
Start: 2854348
End: 2856168
Strand: Direct
Name: luxQ [H]
Synonym: ABO_2517
Alternate gene names: 110835378
Gene position: 2854348-2856168 (Clockwise)
Preceding gene: 110835376
Following gene: 110835380
Centisome position: 91.48
GC content: 54.37
Gene sequence:
>1821_bases ATGGGTGAATTTCACCCGAGGGCGCTTACATGCCGTAATAATCGGGCTAGACTGGGTGCCAGTCATTTTACAAACCCGCC AGCCATGCCAGAAACCCTTCGTCGTGCGGTGACGGAAAACCGCGAACGCATCCTTCAGGAGCGCCACAACCTGTTCATGG AAGAGGTGGGGTCACGCATGGTGCTGTCGTTTTTTATTGCAGCGGCACTGCCATTATTTTTTCTGAAGCTGCGTACAGAG CCGCCCTTTATCGGCTGGTATACCGTGCTGCTTTGTGTCGCAGCACAATCTTTTTTCCTCATCCGGTTTTACAACGCCCA TCGGGAACACGAAGCGCCTAAAACCCGGAAATGGCATCGGCTAAACCTCTACCTTGCCGTGATCTGGGCGATACTGTGGT CAAGTTTCCCTTATCTCTTCCTGCAAGGGGCCACGCCGGTAACCCTGCTGACCTGTCTGGTTATCCTCTCGGTGGCCACC TCGATCCCGTCTGTATCCATGGGTGTGTATCCGGATATTTTTATCAGTTTCATAACACCGGTTTATCTCGCCTGGCTGGC CTTTATTCTGATTTACGTACCGCAAGCGCCAGGGATCATCAAAATCATTCCGTTGGCCAACCTGATTTCCATGATCGTGT TTAGTCTTTATGTTCACCGCACACAGATCAGCACTATCGCCCTGCGAATTGAAGCAGAACAGGCCAAAGAACGTGCCCGC AAGGCCAGTGAAAGCAAAACCCGGTTTCTGGCCGCCGCTAGCCACGACCTGAGGCAACCGCTGCAGGCGGCCACCCTGTA TGCCGCCATGCTGAAAAACAATGCCGACCCACAACCCGATATCGTCGACAAGCTGGATACCGCCATTGGCTCCTGCAATG AACTGCTGGGGCACTTGCTCATGCTGTCGCGCTTGCAGTCCAGGCGACTAAAACCCCGCAAACGCATTATCAGCCTACTG GACACCTTGCAGCCCATCCTTGATGAAATTCGACCACAGGCAAACGCAAAGCAACTGGCTGTGGTCACCAAAAATCTAGC CGGCCAGCATGTGTTCGCCGATGGGGTCATGCTCGCTCGCATTGTCCGCAACCTGGTCAATAATGCCCTCAAATACACCG AGCGCGGGCATATTCGTATTGCCGCCCGGCAGCAGGACAATCAATTGTTGCTGGACATCGCAGACACCGGCATCGGGATT GACGAAATCTATCAGTTCGAGGTGTTCGACGAATTCATGCAGATAGACAACGACCAACGTTCGATCCAGAACGGACTAGG GCTGGGCCTCGCCATCGTCAGCCGACTGGCTGCACTGTGCGACATTCCGTTCAATATGCAGTCACGCAAGGGCGAAGGCA CCACCTTCACGTTGACGTTACCGGCGGCGGCCTCCAGCCAGACACAGCCCGCTCACAACGTGGTCAATGCGCTGCCACTG TTTGAAACACTGACCGTGCTATTGATAGATGATGACAAAAGGGTTACAGAAGCCCTGAGCAGCCTGCTGGGCAACCTGGG CGCAACAGTAACTGCCCACCACTCGCTGGAGCCAGCCATGCAGGCATTGAAAAAGCGAGGCGCGCCACCTTCAGTGGTCA TTACCGATGATCAGATAGGACCGCATACTAATGCGGGCTCGGTCATCGCCGCGGTAACCGCATTGTTCCGCCAGCCAATT CCCGCCCTGATCATCACCGGCAATACCGATCCGCAATTCATTCAGTCCTTGCCGGAGGACATTGATGTGCTGTTCAAACC GGTAGCAGCGGATACGCTAACCGCAAAACTGGAGGAAATGATGTCCTCCAAGAAAAGCTAA
Upstream 100 bases:
>100_bases GAGTGAGTTGCTTGTTGATCATTGCGCTTACCCCGATTGGTTACTCATCCCAGAGAGGCGTTTATTAGAGCACCGGGAGG AATTTGGCTTCTTCACCCTG
Downstream 100 bases:
>100_bases AGCAGGCCTATCTGGCGGGCTTTTTCGATACAGGCGGTGCGGTTAGGCACGTCCAGTTTTTCGTAGAGTAGTCGCAAGTG GGTCTTGATGGTGTTCACGC
Product: two-component sensor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MGEFHPRALTCRNNRARLGASHFTNPPAMPETLRRAVTENRERILQERHNLFMEEVGSRMVLSFFIAAALPLFFLKLRTE PPFIGWYTVLLCVAAQSFFLIRFYNAHREHEAPKTRKWHRLNLYLAVIWAILWSSFPYLFLQGATPVTLLTCLVILSVAT SIPSVSMGVYPDIFISFITPVYLAWLAFILIYVPQAPGIIKIIPLANLISMIVFSLYVHRTQISTIALRIEAEQAKERAR KASESKTRFLAAASHDLRQPLQAATLYAAMLKNNADPQPDIVDKLDTAIGSCNELLGHLLMLSRLQSRRLKPRKRIISLL DTLQPILDEIRPQANAKQLAVVTKNLAGQHVFADGVMLARIVRNLVNNALKYTERGHIRIAARQQDNQLLLDIADTGIGI DEIYQFEVFDEFMQIDNDQRSIQNGLGLGLAIVSRLAALCDIPFNMQSRKGEGTTFTLTLPAAASSQTQPAHNVVNALPL FETLTVLLIDDDKRVTEALSSLLGNLGATVTAHHSLEPAMQALKKRGAPPSVVITDDQIGPHTNAGSVIAAVTALFRQPI PALIITGNTDPQFIQSLPEDIDVLFKPVAADTLTAKLEEMMSSKKS
Sequences:
>Translated_606_residues MGEFHPRALTCRNNRARLGASHFTNPPAMPETLRRAVTENRERILQERHNLFMEEVGSRMVLSFFIAAALPLFFLKLRTE PPFIGWYTVLLCVAAQSFFLIRFYNAHREHEAPKTRKWHRLNLYLAVIWAILWSSFPYLFLQGATPVTLLTCLVILSVAT SIPSVSMGVYPDIFISFITPVYLAWLAFILIYVPQAPGIIKIIPLANLISMIVFSLYVHRTQISTIALRIEAEQAKERAR KASESKTRFLAAASHDLRQPLQAATLYAAMLKNNADPQPDIVDKLDTAIGSCNELLGHLLMLSRLQSRRLKPRKRIISLL DTLQPILDEIRPQANAKQLAVVTKNLAGQHVFADGVMLARIVRNLVNNALKYTERGHIRIAARQQDNQLLLDIADTGIGI DEIYQFEVFDEFMQIDNDQRSIQNGLGLGLAIVSRLAALCDIPFNMQSRKGEGTTFTLTLPAAASSQTQPAHNVVNALPL FETLTVLLIDDDKRVTEALSSLLGNLGATVTAHHSLEPAMQALKKRGAPPSVVITDDQIGPHTNAGSVIAAVTALFRQPI PALIITGNTDPQFIQSLPEDIDVLFKPVAADTLTAKLEEMMSSKKS >Mature_605_residues GEFHPRALTCRNNRARLGASHFTNPPAMPETLRRAVTENRERILQERHNLFMEEVGSRMVLSFFIAAALPLFFLKLRTEP PFIGWYTVLLCVAAQSFFLIRFYNAHREHEAPKTRKWHRLNLYLAVIWAILWSSFPYLFLQGATPVTLLTCLVILSVATS IPSVSMGVYPDIFISFITPVYLAWLAFILIYVPQAPGIIKIIPLANLISMIVFSLYVHRTQISTIALRIEAEQAKERARK ASESKTRFLAAASHDLRQPLQAATLYAAMLKNNADPQPDIVDKLDTAIGSCNELLGHLLMLSRLQSRRLKPRKRIISLLD TLQPILDEIRPQANAKQLAVVTKNLAGQHVFADGVMLARIVRNLVNNALKYTERGHIRIAARQQDNQLLLDIADTGIGID EIYQFEVFDEFMQIDNDQRSIQNGLGLGLAIVSRLAALCDIPFNMQSRKGEGTTFTLTLPAAASSQTQPAHNVVNALPLF ETLTVLLIDDDKRVTEALSSLLGNLGATVTAHHSLEPAMQALKKRGAPPSVVITDDQIGPHTNAGSVIAAVTALFRQPIP ALIITGNTDPQFIQSLPEDIDVLFKPVAADTLTAKLEEMMSSKKS
Specific function: At low cell density, in absence of autoinducer has a kinase activity, and autophosphorylates on a histidine residue. The phosphoryl group is then transferred to an aspartate residue in the response regulator domain. The phosphoryl group is transferred to
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI145693157, Length=341, Percent_Identity=27.2727272727273, Blast_Score=106, Evalue=5e-24, Organism=Escherichia coli, GI87081816, Length=418, Percent_Identity=25.8373205741627, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI48994928, Length=387, Percent_Identity=24.8062015503876, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1789149, Length=244, Percent_Identity=32.7868852459016, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788713, Length=270, Percent_Identity=26.2962962962963, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI1786912, Length=253, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1790551, Length=211, Percent_Identity=30.8056872037915, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI1786783, Length=231, Percent_Identity=24.6753246753247, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1788549, Length=235, Percent_Identity=27.2340425531915, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1788393, Length=195, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1788279, Length=205, Percent_Identity=26.8292682926829, Blast_Score=63, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR015387 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 - ProDom: PD142495 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF09308 LuxQ-periplasm; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 67324; Mature: 67193
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEFHPRALTCRNNRARLGASHFTNPPAMPETLRRAVTENRERILQERHNLFMEEVGSRM CCCCCCCEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLSFFIAAALPLFFLKLRTEPPFIGWYTVLLCVAAQSFFLIRFYNAHREHEAPKTRKWHR HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LNLYLAVIWAILWSSFPYLFLQGATPVTLLTCLVILSVATSIPSVSMGVYPDIFISFITP HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH VYLAWLAFILIYVPQAPGIIKIIPLANLISMIVFSLYVHRTQISTIALRIEAEQAKERAR HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHH KASESKTRFLAAASHDLRQPLQAATLYAAMLKNNADPQPDIVDKLDTAIGSCNELLGHLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH MLSRLQSRRLKPRKRIISLLDTLQPILDEIRPQANAKQLAVVTKNLAGQHVFADGVMLAR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH IVRNLVNNALKYTERGHIRIAARQQDNQLLLDIADTGIGIDEIYQFEVFDEFMQIDNDQR HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHH SIQNGLGLGLAIVSRLAALCDIPFNMQSRKGEGTTFTLTLPAAASSQTQPAHNVVNALPL HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH FETLTVLLIDDDKRVTEALSSLLGNLGATVTAHHSLEPAMQALKKRGAPPSVVITDDQIG HHHHEEEEECCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEEECCCCC PHTNAGSVIAAVTALFRQPIPALIITGNTDPQFIQSLPEDIDVLFKPVAADTLTAKLEEM CCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH MSSKKS HHCCCC >Mature Secondary Structure GEFHPRALTCRNNRARLGASHFTNPPAMPETLRRAVTENRERILQERHNLFMEEVGSRM CCCCCCEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLSFFIAAALPLFFLKLRTEPPFIGWYTVLLCVAAQSFFLIRFYNAHREHEAPKTRKWHR HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LNLYLAVIWAILWSSFPYLFLQGATPVTLLTCLVILSVATSIPSVSMGVYPDIFISFITP HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH VYLAWLAFILIYVPQAPGIIKIIPLANLISMIVFSLYVHRTQISTIALRIEAEQAKERAR HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHHHHHHH KASESKTRFLAAASHDLRQPLQAATLYAAMLKNNADPQPDIVDKLDTAIGSCNELLGHLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH MLSRLQSRRLKPRKRIISLLDTLQPILDEIRPQANAKQLAVVTKNLAGQHVFADGVMLAR HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH IVRNLVNNALKYTERGHIRIAARQQDNQLLLDIADTGIGIDEIYQFEVFDEFMQIDNDQR HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHH SIQNGLGLGLAIVSRLAALCDIPFNMQSRKGEGTTFTLTLPAAASSQTQPAHNVVNALPL HHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH FETLTVLLIDDDKRVTEALSSLLGNLGATVTAHHSLEPAMQALKKRGAPPSVVITDDQIG HHHHEEEEECCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEEECCCCC PHTNAGSVIAAVTALFRQPIPALIITGNTDPQFIQSLPEDIDVLFKPVAADTLTAKLEEM CCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH MSSKKS HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]