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The map label for this gene is yocS [H]

Identifier: 110835376

GI number: 110835376

Start: 2851696

End: 2852643

Strand: Direct

Name: yocS [H]

Synonym: ABO_2515

Alternate gene names: 110835376

Gene position: 2851696-2852643 (Clockwise)

Preceding gene: 110835374

Following gene: 110835378

Centisome position: 91.4

GC content: 59.49

Gene sequence:

>948_bases
ATGCTCAACCGCCTCGCCCAACTATTCCCACTCTGGGCCTTGCTGTTTTCTCTGCTGGCCTATTGGCAGCCACAGTGGCT
AGTGGCCGGCAAGGACGCCATCGTGCCACTGCTTATGCTGATTATGTTCGGCATGGGGCTATCATTAAGCTGGGCGGATT
TTCAGCGGGTACTGAAATGCCCCGGCGTGATTGGCCTGGGCGTTGCCCTGCAATACAGCCTGATGCCACTGATCGCCTGG
GGCATTGGCATCGCACTGCAACTGCCCGAGGAACTATTAGTCGGCCTGATCTTGGTCGGGGCCTGCCCCGGCGGCACCGC
CTCCAATGTGATTGCCTATCTGGCACGGGCCAACGTGGCGCTGTCGGTGGCCATCACATTCGCTTCAACCCTGCTAGCGA
TCATCGCCACCCCCTTGCTGACCTGGCTATACTTGGGCGAGCGCATCCCGGTGCCAGTGAATGGCATGCTACTGTCGCTG
GTACAAATCGTCATCGTCCCGGTGGTGGCAGGCTGCGCCTTGAATACGTTTTTCAACCGCCAGCTCACACCAATACGGGA
TTGTTTCCCGCTGGTGTCCGTGGCCGCCATTGTGGCCGTCATCGGCATTATCGTGGCATTGAATCAGGGGCGTATCGGGG
AAGCCGGGCTGGCCGTGTTTGTGGCGGTAGCGCTGCACAACGGACTGGGATTACTGGGTGGGTATGGGGTCGCCCGGCTA
CTGCGTCTGGACCGGCAAACCTCGCGTACCCTGGCCATTGAAGTAGGTATGCAGAACTCCGGGCTGGGGGTGGCATTGGC
CATTAAACATTTCACCCCACTGGCCGCGCTACCGGGCGCCCTGTTCAGTGTCTGGCATAATTTGTCTGGCTCTCTTCTCG
CCACCGTGTGGCAACGGGATGCGTCTGCCTCACACCCTGATAGCAATAACGAAACGCATCACCCGTAA

Upstream 100 bases:

>100_bases
TGAATCCTCTTCTTGAATCACCGCTTTCACAGATTACTCCTGTGCGTCATTTCGTCTGACAGCTTACACTGGCCGCTTTC
CCAACGAACAGGCGATCTTC

Downstream 100 bases:

>100_bases
AAAAACACACTTGCCAGCAAGAATCTGCTCCCCAAAAAAAAGCGGGCCAGAGGCCCGCTTTGCTATTGCTCACAACCTGA
ATCAGTCGATCACGCTGCTA

Product: Na+ symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MLNRLAQLFPLWALLFSLLAYWQPQWLVAGKDAIVPLLMLIMFGMGLSLSWADFQRVLKCPGVIGLGVALQYSLMPLIAW
GIGIALQLPEELLVGLILVGACPGGTASNVIAYLARANVALSVAITFASTLLAIIATPLLTWLYLGERIPVPVNGMLLSL
VQIVIVPVVAGCALNTFFNRQLTPIRDCFPLVSVAAIVAVIGIIVALNQGRIGEAGLAVFVAVALHNGLGLLGGYGVARL
LRLDRQTSRTLAIEVGMQNSGLGVALAIKHFTPLAALPGALFSVWHNLSGSLLATVWQRDASASHPDSNNETHHP

Sequences:

>Translated_315_residues
MLNRLAQLFPLWALLFSLLAYWQPQWLVAGKDAIVPLLMLIMFGMGLSLSWADFQRVLKCPGVIGLGVALQYSLMPLIAW
GIGIALQLPEELLVGLILVGACPGGTASNVIAYLARANVALSVAITFASTLLAIIATPLLTWLYLGERIPVPVNGMLLSL
VQIVIVPVVAGCALNTFFNRQLTPIRDCFPLVSVAAIVAVIGIIVALNQGRIGEAGLAVFVAVALHNGLGLLGGYGVARL
LRLDRQTSRTLAIEVGMQNSGLGVALAIKHFTPLAALPGALFSVWHNLSGSLLATVWQRDASASHPDSNNETHHP
>Mature_315_residues
MLNRLAQLFPLWALLFSLLAYWQPQWLVAGKDAIVPLLMLIMFGMGLSLSWADFQRVLKCPGVIGLGVALQYSLMPLIAW
GIGIALQLPEELLVGLILVGACPGGTASNVIAYLARANVALSVAITFASTLLAIIATPLLTWLYLGERIPVPVNGMLLSL
VQIVIVPVVAGCALNTFFNRQLTPIRDCFPLVSVAAIVAVIGIIVALNQGRIGEAGLAVFVAVALHNGLGLLGGYGVARL
LRLDRQTSRTLAIEVGMQNSGLGVALAIKHFTPLAALPGALFSVWHNLSGSLLATVWQRDASASHPDSNNETHHP

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=247, Percent_Identity=31.9838056680162, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI4506971, Length=294, Percent_Identity=26.530612244898, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI37537552, Length=287, Percent_Identity=24.0418118466899, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI58219066, Length=238, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI24308414, Length=186, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI215422368, Length=231, Percent_Identity=29.8701298701299, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI215422370, Length=234, Percent_Identity=29.4871794871795, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI9790143, Length=234, Percent_Identity=29.4871794871795, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33412; Mature: 33412

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRLAQLFPLWALLFSLLAYWQPQWLVAGKDAIVPLLMLIMFGMGLSLSWADFQRVLKC
CHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PGVIGLGVALQYSLMPLIAWGIGIALQLPEELLVGLILVGACPGGTASNVIAYLARANVA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
LSVAITFASTLLAIIATPLLTWLYLGERIPVPVNGMLLSLVQIVIVPVVAGCALNTFFNR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QLTPIRDCFPLVSVAAIVAVIGIIVALNQGRIGEAGLAVFVAVALHNGLGLLGGYGVARL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
LRLDRQTSRTLAIEVGMQNSGLGVALAIKHFTPLAALPGALFSVWHNLSGSLLATVWQRD
HHHHHHCCCEEEEEECCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
ASASHPDSNNETHHP
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MLNRLAQLFPLWALLFSLLAYWQPQWLVAGKDAIVPLLMLIMFGMGLSLSWADFQRVLKC
CHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PGVIGLGVALQYSLMPLIAWGIGIALQLPEELLVGLILVGACPGGTASNVIAYLARANVA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
LSVAITFASTLLAIIATPLLTWLYLGERIPVPVNGMLLSLVQIVIVPVVAGCALNTFFNR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QLTPIRDCFPLVSVAAIVAVIGIIVALNQGRIGEAGLAVFVAVALHNGLGLLGGYGVARL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
LRLDRQTSRTLAIEVGMQNSGLGVALAIKHFTPLAALPGALFSVWHNLSGSLLATVWQRD
HHHHHHCCCEEEEEECCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
ASASHPDSNNETHHP
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]