| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835316
Identifier: 110835316
GI number: 110835316
Start: 2780130
End: 2781353
Strand: Direct
Name: 110835316
Synonym: ABO_2455
Alternate gene names: NA
Gene position: 2780130-2781353 (Clockwise)
Preceding gene: 110835315
Following gene: 110835320
Centisome position: 89.1
GC content: 55.96
Gene sequence:
>1224_bases ATGAGCGACTTACTGCCCCGTATTCACCCAGACGATTACTGCAACGAAGACCTACCGACCCTCAGCCAACCCTGGTGGCA AACGTTGCCGTCCAGCTTTCACAGCATGCCGGATCATTTCCTAGCAGATAACGATACCAGCTGGCGCATCAGCAGTACCG CGGCTGTCGATACAGTGGCCCGTACCGGCCTGGCCTTAATGGCCGGCGTGGCTGCTCTGCCTGCCACGCTCAACGCCGCA CGACTCAACGACGAGCGGGCGCTTACAGATTTCTATCGCCCCTTCCTAGCTGAGAGCGATCCCAATACTTTTTTCACACC GCCCACCGTATCGGCAAAAATCAAGCACACGCCGGTATCCAGTTACCATTTTCAACCGGAAGACGGCGACGCCCATACCC TACATTTCACTTCGCCTTTTGTGCCTAAAAACCCGGACCTAAGGGAGCGTTATCTGGACCATACCCGTAACGGCACCGCC TGGGCGCAGCACTGGCGTCACCACGACGGCCCACGCCCTACACTGGTGATGATTCATGGGTTTGTGGCCGACCCTTACTG GCTGAATACTCGCTGGCTGGCGCTGCCCTGGTTCTACAAGCAGGGCTTCGATGTGCTGCTCTATACGCTGCCGTTCCATG GCCGGCGCAAAAGCCGTTTCGCTCCGTTCAGTGGCGCCGAGTTTTTCAGCCAAGGCATGGCGTTACTCAACGAAACCTTT GCACACGCTATTCATGACTTGCGTTTGTTCATGCAAATGTTACGCGAACAAGGATCACCGGCCATCGGCGCCACCGGCAT ATCACTGGGCGGTTACACTACTGGCTTACTGGCCGCACTAGAAAAAGACTTAGCCTTTGCGATCCCCAATGTGCCGTTGG TCAGCGTGATTGATTTGATGAAGAGCTGGTTCCCGATCAACCAACAAGTGAAGCTGCTAAACCGCATCTATGACACCGAT ACCGCAGGCCTTCGTGAAATCACCGCCCTGCACTCGCCCCTAACTTGGCCCTGCCAAATACCGCAAAGCGGGCGCATGAT TATCGGCGGTGCCGGCGACCGATTCGCTCCTCCCAAACATAGTCACCTGTTACGCCAACACTGGAACAACTGTGATGTGC ATTGGTTCCCAGGCAACCACCTGCTACATCTGGATCAAGGCTTATACCTGAAAGCCATGCGGGACTTTATGCGCCAGGCG TTTGCCGCAAAAGGGGTGAGCTAA
Upstream 100 bases:
>100_bases CAACCCTGGTTGAAGTTTTCGGCATTAATCATTGAACGTTTCTGTCATTGCTCTGCCGCCTTCAACCTTTTTTACTTGCG TTTACTCACAAGGAGGTGGC
Downstream 100 bases:
>100_bases GCACCGGAAGCCCGCAAACACCACTTGTTTTATAGGAGCACGTGGCTTTCGCGTGGCAAACCAGACTCGGCGTCCTAGCG GCTTCGATGAAAATGCTAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSDLLPRIHPDDYCNEDLPTLSQPWWQTLPSSFHSMPDHFLADNDTSWRISSTAAVDTVARTGLALMAGVAALPATLNAA RLNDERALTDFYRPFLAESDPNTFFTPPTVSAKIKHTPVSSYHFQPEDGDAHTLHFTSPFVPKNPDLRERYLDHTRNGTA WAQHWRHHDGPRPTLVMIHGFVADPYWLNTRWLALPWFYKQGFDVLLYTLPFHGRRKSRFAPFSGAEFFSQGMALLNETF AHAIHDLRLFMQMLREQGSPAIGATGISLGGYTTGLLAALEKDLAFAIPNVPLVSVIDLMKSWFPINQQVKLLNRIYDTD TAGLREITALHSPLTWPCQIPQSGRMIIGGAGDRFAPPKHSHLLRQHWNNCDVHWFPGNHLLHLDQGLYLKAMRDFMRQA FAAKGVS
Sequences:
>Translated_407_residues MSDLLPRIHPDDYCNEDLPTLSQPWWQTLPSSFHSMPDHFLADNDTSWRISSTAAVDTVARTGLALMAGVAALPATLNAA RLNDERALTDFYRPFLAESDPNTFFTPPTVSAKIKHTPVSSYHFQPEDGDAHTLHFTSPFVPKNPDLRERYLDHTRNGTA WAQHWRHHDGPRPTLVMIHGFVADPYWLNTRWLALPWFYKQGFDVLLYTLPFHGRRKSRFAPFSGAEFFSQGMALLNETF AHAIHDLRLFMQMLREQGSPAIGATGISLGGYTTGLLAALEKDLAFAIPNVPLVSVIDLMKSWFPINQQVKLLNRIYDTD TAGLREITALHSPLTWPCQIPQSGRMIIGGAGDRFAPPKHSHLLRQHWNNCDVHWFPGNHLLHLDQGLYLKAMRDFMRQA FAAKGVS >Mature_406_residues SDLLPRIHPDDYCNEDLPTLSQPWWQTLPSSFHSMPDHFLADNDTSWRISSTAAVDTVARTGLALMAGVAALPATLNAAR LNDERALTDFYRPFLAESDPNTFFTPPTVSAKIKHTPVSSYHFQPEDGDAHTLHFTSPFVPKNPDLRERYLDHTRNGTAW AQHWRHHDGPRPTLVMIHGFVADPYWLNTRWLALPWFYKQGFDVLLYTLPFHGRRKSRFAPFSGAEFFSQGMALLNETFA HAIHDLRLFMQMLREQGSPAIGATGISLGGYTTGLLAALEKDLAFAIPNVPLVSVIDLMKSWFPINQQVKLLNRIYDTDT AGLREITALHSPLTWPCQIPQSGRMIIGGAGDRFAPPKHSHLLRQHWNNCDVHWFPGNHLLHLDQGLYLKAMRDFMRQAF AAKGVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019149 [H]
Pfam domain/function: PF09752 DUF2048 [H]
EC number: NA
Molecular weight: Translated: 46025; Mature: 45894
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLLPRIHPDDYCNEDLPTLSQPWWQTLPSSFHSMPDHFLADNDTSWRISSTAAVDTVA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCEEEECHHHHHHHH RTGLALMAGVAALPATLNAARLNDERALTDFYRPFLAESDPNTFFTPPTVSAKIKHTPVS HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCC SYHFQPEDGDAHTLHFTSPFVPKNPDLRERYLDHTRNGTAWAQHWRHHDGPRPTLVMIHG CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEE FVADPYWLNTRWLALPWFYKQGFDVLLYTLPFHGRRKSRFAPFSGAEFFSQGMALLNETF EECCCEEECCEEEEECHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH AHAIHDLRLFMQMLREQGSPAIGATGISLGGYTTGLLAALEKDLAFAIPNVPLVSVIDLM HHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KSWFPINQQVKLLNRIYDTDTAGLREITALHSPLTWPCQIPQSGRMIIGGAGDRFAPPKH HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHH SHLLRQHWNNCDVHWFPGNHLLHLDQGLYLKAMRDFMRQAFAAKGVS HHHHHHHCCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDLLPRIHPDDYCNEDLPTLSQPWWQTLPSSFHSMPDHFLADNDTSWRISSTAAVDTVA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCEEEECHHHHHHHH RTGLALMAGVAALPATLNAARLNDERALTDFYRPFLAESDPNTFFTPPTVSAKIKHTPVS HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCC SYHFQPEDGDAHTLHFTSPFVPKNPDLRERYLDHTRNGTAWAQHWRHHDGPRPTLVMIHG CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEE FVADPYWLNTRWLALPWFYKQGFDVLLYTLPFHGRRKSRFAPFSGAEFFSQGMALLNETF EECCCEEECCEEEEECHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH AHAIHDLRLFMQMLREQGSPAIGATGISLGGYTTGLLAALEKDLAFAIPNVPLVSVIDLM HHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH KSWFPINQQVKLLNRIYDTDTAGLREITALHSPLTWPCQIPQSGRMIIGGAGDRFAPPKH HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHH SHLLRQHWNNCDVHWFPGNHLLHLDQGLYLKAMRDFMRQAFAAKGVS HHHHHHHCCCCCEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]