| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835091
Identifier: 110835091
GI number: 110835091
Start: 2547073
End: 2548614
Strand: Reverse
Name: 110835091
Synonym: ABO_2230
Alternate gene names: NA
Gene position: 2548614-2547073 (Counterclockwise)
Preceding gene: 110835092
Following gene: 110835090
Centisome position: 81.68
GC content: 56.94
Gene sequence:
>1542_bases ATGACGGCGCGGCATTGCAAAAAACATTGGAGGCTTTTTGTGGAGCATGATGACGAGCGTTTCTATAGCGGTGCCTCGCG TGGGGACTTTCTGGATGCCATGACGGCCCACGCCGAGCAGGGCTCGGTGGTCGCTATAGAGGGCGACACCGGCAGTGGTG TTTCTATACTGCTCGGGCAGGCAGTGATGGCCTTAATTACTGACATGGAAGTGGTTCGCATTGATGGCAGTAAGCCCCAT GATGCCTCTGTGGTGGTTGAGGCTTTGCTGCGACATTTCGATATTGACCGTGCTGACTTGCCCCAAGTGTTGCGCGAAAC GCTGGCGACTGGCCGTTTGGTTGTGGTGGTAGATAATAGTGAGGACCTGAGAGCTGATGCGCTGACGACCATGGAGGCCC TAAAGCAAAAGCTGGGGGCACGATTGTGCTATTTGTTTGGCGGTCTGCCGGGTACGGTTGAGGCGCTCAAATCCGTGGGT TTTACCGTGGATGATATGTTGGATCTGCCTAAGCTGAATGCCGATGATGTGCAGGATTTTGCTTGGCTTGTAGCCGGTGT TGAACTGGATGACGAGGAGTCTGAGCAGTTAGCGCACCGTAGTGAAGGGTTGCCGGGGGCTTTGCTGGGATTGCTGCAGG GTACCAGAGGGAGTGTAGCAGCAGTGCCGGTGGGGGCGATGACGGCAGGGCGCAATAACGTAGATGAAACCGATGAGGCG GAAGGCGACATGAGTGATATGTCGGGTTTCTCCGCGCGCTCCAGCGACGATGAAGATGATGAAGAGCGGCTGTCGGCGGT GCCGACTCATGCGGCCGTCGTTTCGCATACCACGGCGCCTTGGCGCCATGGGGCGGCAGTGGTCGGTCTGTTGCTGGTGG TTATCATTCTGTGGTCAGTATTTGCCGGTGGTGAGGATGAGGTTGTAGCACCTGATTCTCGGAAATTAGCTTTGCCTGTA CCGCAATCCGTGCCCGCTGAGCAGGTGGCTGAATCACAGGAGCGGAAGGTGACACCGCTGAAGCCGACCATGGAGCCGGT GGCTCGTCTTGAGGATCTAGGGGCCAAGAAGGAAGAGGGTGCGGATGGGACCAAAGAGGCACAAACCGACAATGTGCAGT TGGCTCCAGTGACCGATCCGGTGATGCAATCTTCGCCGGCCCAAGCTCAACGGCAGGTTGAAGTGGCGCCTACGCCAGCA AGGCCTGAAAAAACGGAGGTGGAAACGGTTTCATCAGCGCAGAGGGAAAAAACCTCAGGTTATAACCAGGCGTCTTGGTT GGCTGCGGTGGATGACGACAGCTGGTTCCTGCAGATTACAGCCACCAGCCAGGAGGCCAATGCTCGTGGGGTGTTGGACC AATTGGGCCGTAAGGGGGCCTATTATCCGGCCAAGCGGAATGATAAAACCGTGTTTGTGGTGCTCGCTGGCGACTATTCC AGTCGTCAGGCCGCTGTGGATGCAAAGTCGACGTTACCGGCGAAGTTACGCGCAGCGGGTCCCTTTCCTCGCAAGATGGC CGATATTCGCGGAGAACTTTGA
Upstream 100 bases:
>100_bases CAATTTATGGACCTAATGGCCTTGGATAAGAAGGTTCATAATGGCCAGTTGCGCCTTGTGTTGCTGCGTGAGCTGGGTAA GGCTGTGGTAACGGCGGATT
Downstream 100 bases:
>100_bases GCAGAAAAAGCGCCTTGGGTGGCGGTTCAGTTTGTCGCCCAAGCGCGCAATGTGTAGAATGTGTATCCCTTTTTTGCCGT CACCATTTTCTTGACGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 512
Protein sequence:
>513_residues MTARHCKKHWRLFVEHDDERFYSGASRGDFLDAMTAHAEQGSVVAIEGDTGSGVSILLGQAVMALITDMEVVRIDGSKPH DASVVVEALLRHFDIDRADLPQVLRETLATGRLVVVVDNSEDLRADALTTMEALKQKLGARLCYLFGGLPGTVEALKSVG FTVDDMLDLPKLNADDVQDFAWLVAGVELDDEESEQLAHRSEGLPGALLGLLQGTRGSVAAVPVGAMTAGRNNVDETDEA EGDMSDMSGFSARSSDDEDDEERLSAVPTHAAVVSHTTAPWRHGAAVVGLLLVVIILWSVFAGGEDEVVAPDSRKLALPV PQSVPAEQVAESQERKVTPLKPTMEPVARLEDLGAKKEEGADGTKEAQTDNVQLAPVTDPVMQSSPAQAQRQVEVAPTPA RPEKTEVETVSSAQREKTSGYNQASWLAAVDDDSWFLQITATSQEANARGVLDQLGRKGAYYPAKRNDKTVFVVLAGDYS SRQAAVDAKSTLPAKLRAAGPFPRKMADIRGEL
Sequences:
>Translated_513_residues MTARHCKKHWRLFVEHDDERFYSGASRGDFLDAMTAHAEQGSVVAIEGDTGSGVSILLGQAVMALITDMEVVRIDGSKPH DASVVVEALLRHFDIDRADLPQVLRETLATGRLVVVVDNSEDLRADALTTMEALKQKLGARLCYLFGGLPGTVEALKSVG FTVDDMLDLPKLNADDVQDFAWLVAGVELDDEESEQLAHRSEGLPGALLGLLQGTRGSVAAVPVGAMTAGRNNVDETDEA EGDMSDMSGFSARSSDDEDDEERLSAVPTHAAVVSHTTAPWRHGAAVVGLLLVVIILWSVFAGGEDEVVAPDSRKLALPV PQSVPAEQVAESQERKVTPLKPTMEPVARLEDLGAKKEEGADGTKEAQTDNVQLAPVTDPVMQSSPAQAQRQVEVAPTPA RPEKTEVETVSSAQREKTSGYNQASWLAAVDDDSWFLQITATSQEANARGVLDQLGRKGAYYPAKRNDKTVFVVLAGDYS SRQAAVDAKSTLPAKLRAAGPFPRKMADIRGEL >Mature_512_residues TARHCKKHWRLFVEHDDERFYSGASRGDFLDAMTAHAEQGSVVAIEGDTGSGVSILLGQAVMALITDMEVVRIDGSKPHD ASVVVEALLRHFDIDRADLPQVLRETLATGRLVVVVDNSEDLRADALTTMEALKQKLGARLCYLFGGLPGTVEALKSVGF TVDDMLDLPKLNADDVQDFAWLVAGVELDDEESEQLAHRSEGLPGALLGLLQGTRGSVAAVPVGAMTAGRNNVDETDEAE GDMSDMSGFSARSSDDEDDEERLSAVPTHAAVVSHTTAPWRHGAAVVGLLLVVIILWSVFAGGEDEVVAPDSRKLALPVP QSVPAEQVAESQERKVTPLKPTMEPVARLEDLGAKKEEGADGTKEAQTDNVQLAPVTDPVMQSSPAQAQRQVEVAPTPAR PEKTEVETVSSAQREKTSGYNQASWLAAVDDDSWFLQITATSQEANARGVLDQLGRKGAYYPAKRNDKTVFVVLAGDYSS RQAAVDAKSTLPAKLRAAGPFPRKMADIRGEL
Specific function: Unknown
COG id: COG3266
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55038; Mature: 54907
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARHCKKHWRLFVEHDDERFYSGASRGDFLDAMTAHAEQGSVVAIEGDTGSGVSILLGQ CCHHHHHHHCEEEEEECCHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH AVMALITDMEVVRIDGSKPHDASVVVEALLRHFDIDRADLPQVLRETLATGRLVVVVDNS HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECC EDLRADALTTMEALKQKLGARLCYLFGGLPGTVEALKSVGFTVDDMLDLPKLNADDVQDF CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHH AWLVAGVELDDEESEQLAHRSEGLPGALLGLLQGTRGSVAAVPVGAMTAGRNNVDETDEA HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCC EGDMSDMSGFSARSSDDEDDEERLSAVPTHAAVVSHTTAPWRHGAAVVGLLLVVIILWSV CCCHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH FAGGEDEVVAPDSRKLALPVPQSVPAEQVAESQERKVTPLKPTMEPVARLEDLGAKKEEG HCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCC ADGTKEAQTDNVQLAPVTDPVMQSSPAQAQRQVEVAPTPARPEKTEVETVSSAQREKTSG CCCCCCCCCCCEEEEECCCHHHCCCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCC YNQASWLAAVDDDSWFLQITATSQEANARGVLDQLGRKGAYYPAKRNDKTVFVVLAGDYS CCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC SRQAAVDAKSTLPAKLRAAGPFPRKMADIRGEL CCHHHCCCHHCCCHHHHCCCCCHHHHHHHCCCC >Mature Secondary Structure TARHCKKHWRLFVEHDDERFYSGASRGDFLDAMTAHAEQGSVVAIEGDTGSGVSILLGQ CHHHHHHHCEEEEEECCHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH AVMALITDMEVVRIDGSKPHDASVVVEALLRHFDIDRADLPQVLRETLATGRLVVVVDNS HHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECC EDLRADALTTMEALKQKLGARLCYLFGGLPGTVEALKSVGFTVDDMLDLPKLNADDVQDF CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHCCCCCCHHHHHHH AWLVAGVELDDEESEQLAHRSEGLPGALLGLLQGTRGSVAAVPVGAMTAGRNNVDETDEA HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCC EGDMSDMSGFSARSSDDEDDEERLSAVPTHAAVVSHTTAPWRHGAAVVGLLLVVIILWSV CCCHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH FAGGEDEVVAPDSRKLALPVPQSVPAEQVAESQERKVTPLKPTMEPVARLEDLGAKKEEG HCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCC ADGTKEAQTDNVQLAPVTDPVMQSSPAQAQRQVEVAPTPARPEKTEVETVSSAQREKTSG CCCCCCCCCCCEEEEECCCHHHCCCCHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHCC YNQASWLAAVDDDSWFLQITATSQEANARGVLDQLGRKGAYYPAKRNDKTVFVVLAGDYS CCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC SRQAAVDAKSTLPAKLRAAGPFPRKMADIRGEL CCHHHCCCHHCCCHHHHCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA