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The map label for this gene is rre2 [H]

Identifier: 110835028

GI number: 110835028

Start: 2477027

End: 2478235

Strand: Reverse

Name: rre2 [H]

Synonym: ABO_2167

Alternate gene names: 110835028

Gene position: 2478235-2477027 (Counterclockwise)

Preceding gene: 110835029

Following gene: 110835023

Centisome position: 79.43

GC content: 56.74

Gene sequence:

>1209_bases
ATGTTAGACACGGATCCGCGATCGCGACGGGTGGTGGTTCCCGGGGTGCGCTGGTTGCGTTTCCCTCGACGCTTGGAAGG
CGAATACCGCAACTACCAGAGCCAGCAGGCGGTAGAGGCCTTCCGGGTGAACGCCTTTTATATCCTACTGCTCTATATGT
TGCTGATTACCGGCATTTACGCGCTGGCGCCGGAGCAGATTCGTGGTTGGTGGTTGTCCGCCTATATCTGGGAGGGGCCC
ATTGTGTTGGTGGCGGGCCTCCTTGCGCAGATTCGCGTATTGGATCGTTACTTCCCTTATTATGCCGGTGTCGGCTGTTT
TCTTGCTGTGGCGCTGGCTGTGGCAATTCCTGGTTTTATGAGCGACCCTCGTGCGATTCTGTTGGCTCATGTGTCGATCA
TTTATGCCCTCGTTATTATTTATGCCATGGTTGGGTTGCGTTTTACCGTGGCGATGATCGCGGGTTGGACCGGTGGCCTA
GTGGGCGTGTTGATCGCTGAAGGGTTAGGGCAGGGGTTGGACTGGCAGGTTCTACACGGCACTTATACTGGGATCAGCTT
GGTGGGCATGTTCTTGTGCTATTCTGCGGAAGTCCGCGATAGGTTGCTCTTTTTTAACCAACGCCAGCTTCGTCGTCAGC
AACGGCACAGCCAGGCGCTGGCAGAACGCCTGCATCGCTTGAGCAGGGAAGACAGCCTTACCGGGCTGGCTAACCGACGG
TTTTTTGATGAGGCGTTTGATCGCGAATGGCGGCGTTGCAAGCGCAGCCAGCAACCGCTAACGGTAATGCTGGTGGATGT
AGACCGCTTTAAGGCCTACAACGATGGCTACGGACACCTGCAAGGGGATTCGTGTCTGCAAAAACTGGCGGCGGAATTGC
ATCGCTACAGTCGGCGAGCCGGTGATTTGGTGGCCCGTTTCGGAGGCGAAGAGTTCGCATTATTGTACCCGGAGACGGAT
GAGTTGGAGGCGCAGCAGCTGGCCTCCCGGTTATGTCGGTCAGTACGCTCGCTGGCGATCCCTCACGCTGATAGCCCGGA
GATGAACGAGGTAACGGTCAGCGTAGGGGTTGCAACGATGATTCCGAATCAGCGTCATAGTGCTGGCGATCTGTTGGAAG
CTGCGGATCAAGCCTTGTATCTAGTTAAACAGGGTGGCCGTGATAATTGGCGCCTCTATGAAGCACCGCCGGCCGCGGGG
CAGCTCTAG

Upstream 100 bases:

>100_bases
TACCTGATATCGTTTTGTCACTACCGTTGGCACTAAAAGGATAGCGCTGCTGATGGTTAGCTTTTAGCCTGAAGGAAGCT
TTAATAGTAAAGGATTGACG

Downstream 100 bases:

>100_bases
CTACGGAGCGCCAAAGCGGCGAAGGGAGCGATAATCTCCCCCCGTTCGAGCTTTTCTTTGCTGTTGATTATTAACGCTGG
TGGGCTTCTCGTAGCCTTTG

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MLDTDPRSRRVVVPGVRWLRFPRRLEGEYRNYQSQQAVEAFRVNAFYILLLYMLLITGIYALAPEQIRGWWLSAYIWEGP
IVLVAGLLAQIRVLDRYFPYYAGVGCFLAVALAVAIPGFMSDPRAILLAHVSIIYALVIIYAMVGLRFTVAMIAGWTGGL
VGVLIAEGLGQGLDWQVLHGTYTGISLVGMFLCYSAEVRDRLLFFNQRQLRRQQRHSQALAERLHRLSREDSLTGLANRR
FFDEAFDREWRRCKRSQQPLTVMLVDVDRFKAYNDGYGHLQGDSCLQKLAAELHRYSRRAGDLVARFGGEEFALLYPETD
ELEAQQLASRLCRSVRSLAIPHADSPEMNEVTVSVGVATMIPNQRHSAGDLLEAADQALYLVKQGGRDNWRLYEAPPAAG
QL

Sequences:

>Translated_402_residues
MLDTDPRSRRVVVPGVRWLRFPRRLEGEYRNYQSQQAVEAFRVNAFYILLLYMLLITGIYALAPEQIRGWWLSAYIWEGP
IVLVAGLLAQIRVLDRYFPYYAGVGCFLAVALAVAIPGFMSDPRAILLAHVSIIYALVIIYAMVGLRFTVAMIAGWTGGL
VGVLIAEGLGQGLDWQVLHGTYTGISLVGMFLCYSAEVRDRLLFFNQRQLRRQQRHSQALAERLHRLSREDSLTGLANRR
FFDEAFDREWRRCKRSQQPLTVMLVDVDRFKAYNDGYGHLQGDSCLQKLAAELHRYSRRAGDLVARFGGEEFALLYPETD
ELEAQQLASRLCRSVRSLAIPHADSPEMNEVTVSVGVATMIPNQRHSAGDLLEAADQALYLVKQGGRDNWRLYEAPPAAG
QL
>Mature_402_residues
MLDTDPRSRRVVVPGVRWLRFPRRLEGEYRNYQSQQAVEAFRVNAFYILLLYMLLITGIYALAPEQIRGWWLSAYIWEGP
IVLVAGLLAQIRVLDRYFPYYAGVGCFLAVALAVAIPGFMSDPRAILLAHVSIIYALVIIYAMVGLRFTVAMIAGWTGGL
VGVLIAEGLGQGLDWQVLHGTYTGISLVGMFLCYSAEVRDRLLFFNQRQLRRQQRHSQALAERLHRLSREDSLTGLANRR
FFDEAFDREWRRCKRSQQPLTVMLVDVDRFKAYNDGYGHLQGDSCLQKLAAELHRYSRRAGDLVARFGGEEFALLYPETD
ELEAQQLASRLCRSVRSLAIPHADSPEMNEVTVSVGVATMIPNQRHSAGDLLEAADQALYLVKQGGRDNWRLYEAPPAAG
QL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=33.7349397590361, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.9397590361446, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=39.2638036809816, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=32.972972972973, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081881, Length=189, Percent_Identity=37.037037037037, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=32.5301204819277, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=34.0782122905028, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=30.8571428571429, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=31.9018404907975, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=137, Percent_Identity=35.036496350365, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=166, Percent_Identity=27.710843373494, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=28.0254777070064, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 45473; Mature: 45473

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure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CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]