| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835004
Identifier: 110835004
GI number: 110835004
Start: 2448828
End: 2449256
Strand: Reverse
Name: 110835004
Synonym: ABO_2143
Alternate gene names: NA
Gene position: 2449256-2448828 (Counterclockwise)
Preceding gene: 110835005
Following gene: 110835003
Centisome position: 78.5
GC content: 38.93
Gene sequence:
>429_bases ATGGGGAAGATCAACTTTGTGGCCGGACAGGTGTTACTGAGTGCTGTTTTTATCTTTTTTTCGGCACATGCTTATGGCAG TAGTTTCTCATGTCCGTATGGAAAAAAAGCTGCTTGCTTAAATTATGGGGATAGTGCATGTCCTTCTGATGCGAAATGTG TAAGCCGTGATGCTGTTTGTTTTGATTCCCGTACCTGTGGTTATGATGGTTTCGTATGTAAATCAGAATACGAAGATCTA GGCGATGAGTATGATGATTTGTTGGATGATTGCAAAGAGCTTGCTCATGAGCATGACGATATTATTGATAAATATAATAA ATTGCTTAATAGGTATAAAAATAGGGAGTCTGAATATGAAGAGGTTGAGCTCTGCGTTCGCTATGCGACCACTCTAGAAG AAGTAAAAAGCTGTTTTAATGCAGGTTAA
Upstream 100 bases:
>100_bases AATGCTATAATCTGATCCTGAGGTATTTTGGCAAGGCATTCTCTTAAATGAGATGAGGTTTCGTCATTAAGGCGAGGAAT CACGGTGGGGTGAATCAATA
Downstream 100 bases:
>100_bases CTGGGCGTGTCAGGATGTTTATTATCCTCTGAACATTTTATAAAGAGGACATTCAAATTGTGTGTCACGGTTGACCGCCT TTCCGGCTGATGTGGGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MGKINFVAGQVLLSAVFIFFSAHAYGSSFSCPYGKKAACLNYGDSACPSDAKCVSRDAVCFDSRTCGYDGFVCKSEYEDL GDEYDDLLDDCKELAHEHDDIIDKYNKLLNRYKNRESEYEEVELCVRYATTLEEVKSCFNAG
Sequences:
>Translated_142_residues MGKINFVAGQVLLSAVFIFFSAHAYGSSFSCPYGKKAACLNYGDSACPSDAKCVSRDAVCFDSRTCGYDGFVCKSEYEDL GDEYDDLLDDCKELAHEHDDIIDKYNKLLNRYKNRESEYEEVELCVRYATTLEEVKSCFNAG >Mature_141_residues GKINFVAGQVLLSAVFIFFSAHAYGSSFSCPYGKKAACLNYGDSACPSDAKCVSRDAVCFDSRTCGYDGFVCKSEYEDLG DEYDDLLDDCKELAHEHDDIIDKYNKLLNRYKNRESEYEEVELCVRYATTLEEVKSCFNAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15936; Mature: 15805
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 7.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKINFVAGQVLLSAVFIFFSAHAYGSSFSCPYGKKAACLNYGDSACPSDAKCVSRDAVC CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHCCCHH FDSRTCGYDGFVCKSEYEDLGDEYDDLLDDCKELAHEHDDIIDKYNKLLNRYKNRESEYE CCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH EVELCVRYATTLEEVKSCFNAG HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GKINFVAGQVLLSAVFIFFSAHAYGSSFSCPYGKKAACLNYGDSACPSDAKCVSRDAVC CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHCCCHH FDSRTCGYDGFVCKSEYEDLGDEYDDLLDDCKELAHEHDDIIDKYNKLLNRYKNRESEYE CCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH EVELCVRYATTLEEVKSCFNAG HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA