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The map label for this gene is nahR [H]

Identifier: 110834977

GI number: 110834977

Start: 2421521

End: 2422468

Strand: Reverse

Name: nahR [H]

Synonym: ABO_2116

Alternate gene names: 110834977

Gene position: 2422468-2421521 (Counterclockwise)

Preceding gene: 110834980

Following gene: 110834975

Centisome position: 77.64

GC content: 54.01

Gene sequence:

>948_bases
ATGAATATTGGGGCGGCAGATTTGAATCTGCTCAAGTATCTGGATGTGCTCTTACGCGAGCAGAATGTGACTCGTGCAGC
GGAGCAGTTAGGCATTACTCAACCGGCAATGAGTAACTCCCTGAAGCGGCTGCGGGAATTGTTTGGCGACCCGCTGTTGA
TCCGTACTAGTGATGGTATGACTGCGACGGAACGAGCCCATGAGTTGCGGCCGCTAGTGCGTCAAATTCTTTCTCAGGCA
GAGCAGCTGTTCACCCCCGAAGATGTTTTTCAGCCTGCGGATAGCCGTCGTGTTTTCCGGATCATGACCAGCGATTATGC
GGAAGCGACCCTGGTGCCGCATATTGTGCGCCGCCTGCGTGCCGAAGCGCCCAATGTGGTGCTCGATTTTTTGACGCCGT
CGGATGTGAGCTACCACGACATGGAGCAGGGCCGGGTCGATATGGCGGTGAACCGCTTTAACGAAATCCCAGGATCGTTC
CATCAGGTGAGCCTGTGGAAAGACTCGTTCTCTTGCCTGCTCAATCGGGATAACCCCATCGCGAAAGGGTTCGACTTAGA
TAGTTATCTGTCTGCTCAGCATATTTGGGTGTCGAAAACTGGTTTCGGGGTAGGGTTTGGTATGAACCCGGAAAAGCTCG
GCGGGTTGGGGTGGATTGATCATGCGCTGGAGCAATTGGGCACGAGCCGTAAGATCAGTATCTTTACGCGTCACTATCAA
ATGCCGGCCTTGTTGGCCATGAACAATGACCTGGTAGCCACGCTCCCTAGCCGTGTGGCAAGAATGCAGGCTCAAAATGA
GCGTTTGCTGATCAAGCAACCGCCGTTCGATATTCCCGAATTCGAATTGAAGATGGCCTGGTCGTCGCTGCTGCATCACA
ACGTAGCCCATCGCTGGCTGCGCCGGCTAATTCAGGAGGAAGCGGAGCGTATTCTGGCAGAGGAATAA

Upstream 100 bases:

>100_bases
GAAAAGGTGTGTTCATGTGAACCGGGGACACGATGTCAGCGCGGATCATACAGTGTTACAATTTCTTTTACTGATGTAAG
AATGGGCGGCTATTCACTTA

Downstream 100 bases:

>100_bases
GAGACGTTACGCGTGCCGAGCTGAACGTTGAAAACACGAATTGGTGTGTTGTCGGCCTTGTAGCGTTTTGTTCGTGCGCC
ATGGCCGAGGTGCGAGCTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNIGAADLNLLKYLDVLLREQNVTRAAEQLGITQPAMSNSLKRLRELFGDPLLIRTSDGMTATERAHELRPLVRQILSQA
EQLFTPEDVFQPADSRRVFRIMTSDYAEATLVPHIVRRLRAEAPNVVLDFLTPSDVSYHDMEQGRVDMAVNRFNEIPGSF
HQVSLWKDSFSCLLNRDNPIAKGFDLDSYLSAQHIWVSKTGFGVGFGMNPEKLGGLGWIDHALEQLGTSRKISIFTRHYQ
MPALLAMNNDLVATLPSRVARMQAQNERLLIKQPPFDIPEFELKMAWSSLLHHNVAHRWLRRLIQEEAERILAEE

Sequences:

>Translated_315_residues
MNIGAADLNLLKYLDVLLREQNVTRAAEQLGITQPAMSNSLKRLRELFGDPLLIRTSDGMTATERAHELRPLVRQILSQA
EQLFTPEDVFQPADSRRVFRIMTSDYAEATLVPHIVRRLRAEAPNVVLDFLTPSDVSYHDMEQGRVDMAVNRFNEIPGSF
HQVSLWKDSFSCLLNRDNPIAKGFDLDSYLSAQHIWVSKTGFGVGFGMNPEKLGGLGWIDHALEQLGTSRKISIFTRHYQ
MPALLAMNNDLVATLPSRVARMQAQNERLLIKQPPFDIPEFELKMAWSSLLHHNVAHRWLRRLIQEEAERILAEE
>Mature_315_residues
MNIGAADLNLLKYLDVLLREQNVTRAAEQLGITQPAMSNSLKRLRELFGDPLLIRTSDGMTATERAHELRPLVRQILSQA
EQLFTPEDVFQPADSRRVFRIMTSDYAEATLVPHIVRRLRAEAPNVVLDFLTPSDVSYHDMEQGRVDMAVNRFNEIPGSF
HQVSLWKDSFSCLLNRDNPIAKGFDLDSYLSAQHIWVSKTGFGVGFGMNPEKLGGLGWIDHALEQLGTSRKISIFTRHYQ
MPALLAMNNDLVATLPSRVARMQAQNERLLIKQPPFDIPEFELKMAWSSLLHHNVAHRWLRRLIQEEAERILAEE

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=299, Percent_Identity=28.4280936454849, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI87081766, Length=253, Percent_Identity=24.901185770751, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35937; Mature: 35937

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGAADLNLLKYLDVLLREQNVTRAAEQLGITQPAMSNSLKRLRELFGDPLLIRTSDGM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
TATERAHELRPLVRQILSQAEQLFTPEDVFQPADSRRVFRIMTSDYAEATLVPHIVRRLR
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AEAPNVVLDFLTPSDVSYHDMEQGRVDMAVNRFNEIPGSFHQVSLWKDSFSCLLNRDNPI
CCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCC
AKGFDLDSYLSAQHIWVSKTGFGVGFGMNPEKLGGLGWIDHALEQLGTSRKISIFTRHYQ
CCCCCHHHHHHHHEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEEEHHHC
MPALLAMNNDLVATLPSRVARMQAQNERLLIKQPPFDIPEFELKMAWSSLLHHNVAHRWL
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRLIQEEAERILAEE
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIGAADLNLLKYLDVLLREQNVTRAAEQLGITQPAMSNSLKRLRELFGDPLLIRTSDGM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
TATERAHELRPLVRQILSQAEQLFTPEDVFQPADSRRVFRIMTSDYAEATLVPHIVRRLR
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AEAPNVVLDFLTPSDVSYHDMEQGRVDMAVNRFNEIPGSFHQVSLWKDSFSCLLNRDNPI
CCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCC
AKGFDLDSYLSAQHIWVSKTGFGVGFGMNPEKLGGLGWIDHALEQLGTSRKISIFTRHYQ
CCCCCHHHHHHHHEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEEEHHHC
MPALLAMNNDLVATLPSRVARMQAQNERLLIKQPPFDIPEFELKMAWSSLLHHNVAHRWL
CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RRLIQEEAERILAEE
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]