| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834946
Identifier: 110834946
GI number: 110834946
Start: 2374205
End: 2375134
Strand: Reverse
Name: 110834946
Synonym: ABO_2085
Alternate gene names: NA
Gene position: 2375134-2374205 (Counterclockwise)
Preceding gene: 110834947
Following gene: 110834945
Centisome position: 76.12
GC content: 56.99
Gene sequence:
>930_bases ATGACACAAGGCCGTAGCATTCGACTGTTTCTGGTAGACGGTGCGCCCAATGGCCTACTTTCTGCCGAGATTATGAACTG GACCGGCCATGTGCTTACCGGTCCACGCTCCAAACTTAGCGAACTGGTGCCGCGCCCGGAAGTGGGGCGCACGGGCATCT ATTTTTTGGTGGGGCCAGACCCGGATAACAGCTTTCGCTCGTTAGTTTATATCGGCGAATCCGACGATGTGGGTAAGCGC CTCAAGCAGCACAATAGACCGGAGGGGCAAGGCGGTAAGGATTTTTGGGAAAAAGTCTGCTTGGTTACCAGCAAAGACCA AAACCTGACCAAGGCCCATGTTAAACACCTGGAGAGCCTGCTGATCCAAAATGCTCGCGACGTGGCGCGCTGCACCTTGG TCAACGGTACCGCCCACGACTATATCAATCTGCCGGAAGCGGACCTGGCCGACATGGCCTTCTTTCTGGAACAGATCCGC ACCGTGCTGCCGGTGCTGGGGTTCGACTTCCTCCGCGACAGCACACGCCCTGCCAGCCAGCCCAAGACACAACCAGCAGA ACCGCAGGAATCTCCTTATTTTGTGCTGGAACTGCCTAAACACAATATCAAGGCTCGTGGCCAGGAAGTGGATGGCGAAT TTTTTGTGCTGCAGGGCTCTCTGGCCCGCGAAGAGTGGGTGGGTACCGATCGCGGCTATAAGACCCTGTTCAATCAGTTG CTGGAAGACAGAATCCTGATCCCCACCGATAGCGGCCTCACCACTTTTACCGCTGACCAGGCATTCTCCAGCCCCAGCGG CGCTGCTGCCGTCATCTCCGGCCGTAGCGCTAACGGGCGCACCCAGTGGGCCGTGGAAGGAACTGGCAAGACCTATGGAG ATTGGCAGGATGAGCAAGTGTCGGCTAGTACAGGGCAGGGTTTGGATTAA
Upstream 100 bases:
>100_bases AACTAACTACCGGACAGTGATTTAGGTTTTCCCTCGGCCAGCAGAGGGGCTTAAGTACCGCCTCAATATAAGAAAAATCG ATAATGGAAAAGGATATCCC
Downstream 100 bases:
>100_bases GGAATAACAATGAAGATCGGTTTTGACTTTGGTACCAGCTTTTCAGCATTGGCAGTCTATCGGGATGGTGAGATTCACCG AATCATGTTTGATGGTGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptide-Methionine-S-Oxide Reductase; Excinuclease ABC Subunit C
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MTQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPDPDNSFRSLVYIGESDDVGKR LKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESLLIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIR TVLPVLGFDFLRDSTRPASQPKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQVSASTGQGLD
Sequences:
>Translated_309_residues MTQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPDPDNSFRSLVYIGESDDVGKR LKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESLLIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIR TVLPVLGFDFLRDSTRPASQPKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQVSASTGQGLD >Mature_308_residues TQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPDPDNSFRSLVYIGESDDVGKRL KQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESLLIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIRT VLPVLGFDFLRDSTRPASQPKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQLL EDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQVSASTGQGLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34047; Mature: 33915
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS50164 UVRC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPD CCCCCEEEEEEECCCCCCEEEHEEECCCCCEEECCHHHHHHHCCCCCCCCCEEEEEECCC PDNSFRSLVYIGESDDVGKRLKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESL CCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHH LIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIRTVLPVLGFDFLRDSTRPASQ HHHCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHH LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQV HHCCEEEECCCCCEEEECHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE SASTGQGLD CCCCCCCCC >Mature Secondary Structure TQGRSIRLFLVDGAPNGLLSAEIMNWTGHVLTGPRSKLSELVPRPEVGRTGIYFLVGPD CCCCEEEEEEECCCCCCEEEHEEECCCCCEEECCHHHHHHHCCCCCCCCCEEEEEECCC PDNSFRSLVYIGESDDVGKRLKQHNRPEGQGGKDFWEKVCLVTSKDQNLTKAHVKHLESL CCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCCCHHHHHHHHHHHH LIQNARDVARCTLVNGTAHDYINLPEADLADMAFFLEQIRTVLPVLGFDFLRDSTRPASQ HHHCCHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PKTQPAEPQESPYFVLELPKHNIKARGQEVDGEFFVLQGSLAREEWVGTDRGYKTLFNQL CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHH LEDRILIPTDSGLTTFTADQAFSSPSGAAAVISGRSANGRTQWAVEGTGKTYGDWQDEQV HHCCEEEECCCCCEEEECHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEE SASTGQGLD CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA