Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110834940

Identifier: 110834940

GI number: 110834940

Start: 2364789

End: 2366903

Strand: Reverse

Name: 110834940

Synonym: ABO_2079

Alternate gene names: NA

Gene position: 2366903-2364789 (Counterclockwise)

Preceding gene: 110834941

Following gene: 110834939

Centisome position: 75.86

GC content: 43.07

Gene sequence:

>2115_bases
ATGGAAAAGATAAAAGATAATGTTGGAAATACACACAAAGACGCATCTAGTGTGTTGGAGTGTGATTTTCCCATGATTGA
AATAAGTGAAGTTGCAGAGCAAGAAAGTTGGCGGAAAGAAATAAATAGACCCGTCTATCATATTCATAAGTGGTGGGCTA
CGAGGCTTGGCTCGGTTTTCAGAGCAATTGTGTTGGGGGCATTGAGTCCGCCTGGGAAAGGTATTTGGGATGTTTTTTAT
GAAAAGCATAATTTCTCTGGAAAGGTTGTTCTTGATCCATTTATGGGTAGTGGGACGACTCTTGGTGAAGCTGTAAAGCT
TGGGGCTAAGGCTGTTGGGTGTGATATTAATCCGGTTAGCTCTTTTCTCGTTCGCCAGGCATTTACTCCAGTTCACGATT
CTAAGATAAAGGCAGCATTTTCTTCTTTGGAAGATAAGGTCGCGTCAGAAATAAAATACTATTATCGGACAGTGGACCCA
CATACTGGGGGGATTATCCCGGTGCTATACTATTTTTGGGTTAAGACTGTTTTTACTCCAACGGGTGAAGAGATTCCGCT
TTTCTCTCGTTACGTTTTCTCCCAGAACGCGTATCCAAAGAAAAAGCCGAAAGCGCAGATAGTTTGCCCTAAATGCTGGG
GTGTCTCTGAAGGAAGATACGATGACACAGAGTTTATATGTGGGAGTTGTGGTCATGAATTTAATCCACAGAAAGGCCCC
GTAAGTGGTCAGTCTGTAACTTCAAAGGATGGCAAGCTATACAGAATAAAAGACCTTCTTTCTGAAGGTGGGTCTCCACC
TAAACATAGAATGTATGGCGTATTGGCGCTTCGCCAAGATGGCTCAAAGATCTACTTGCCTGCTCGTGAACAAGATTTTG
CCCTATACAATGAGGCAAAAAAACGTCTTGAGGAAGAGAACCTTCCCTTGCCAGATAGTCCTGTTAGGGAAGGACATAAT
ACGAACCAAGCGCGCGGTTATAACTACAAGTATTGGCGGGACTTTTTTAATTCTCGCCAACTTCTTTGCTTGGGTATGCT
GCTCAAGGAAATACTGAATATTGAGGATAGAGTAATTCAGGAGCAAATGCTTTGCCTTTTTTCGGGTGTTCTTGAGTTTA
ATAATCTTTTTTGTAGTTTCAAAGGTGAAGGTACGGGTGCAGTTAGACATATGTTTTCTAACCATATCCTCAAGCCGGAG
AGGACTCCTTTGGAGAACTCTGTATGGGGAAACAAAAAAAGTAGTGGCACCTTCAGTACCTTGTTCGAGTCGCGACTTCT
CCGGGCAAAGAAATACCTAGATGACCCGTTTGAGGTTGCGATTAAACGTGACCTTTTAGGAAAGCGATTGGGGTCAAGCA
AGGTCGTTGCTAGTAGCCCTGTAGAGGCGAAAATAGTTGAATCCTGGGAAGAGCTAGATTCAGCCGAAAAAGGTTTGCTT
GTTCTTAATGGTGATAGCTCTAAGCTATCGGTTCCGGAGAAATCTATAGATGCGGTTATAACCGATCCTCCTTATTTTGA
CTTCGTTCACTATTCGGAGCTAAGCGATTTTTTCTTTGCCTGGCTTTCTCCTGTTCTGAAAGATAGGTACGAATGGTTTT
CTCGTGCCGACTCATCAGGTGAGGGTGAGGTCCAGCATAAAGATCCATTAGTTTTTTCGCGGCAGTTATCATCTGTTTTT
TCTGAGGCTTGTAGAGTGCTGAAGGATACAGGGGTATTGGCCTTTAGTTTTCATCATTCTAGGCCAGAAGGTTGGGCTGC
TATTTATGAAGCTATCAATAATGCAGGATTGGCTGTTGTGACGGCGCATCCTGTTCATGCAGAACTTCGTGGTGCCAGCC
CAAAAACAGCAGCTAAAGATCCGATTAGTTTAGATGCAATCCTTGTGTGCAGGAAAAGGGAGTTTGCAATAGTAGATAAA
ATGGAAATTAAAGATGTCTGCAGAGCTGTGGATACACTTGCGGGGAAATTTGAGAAAGCAGGAATGACTGTCTCCAATGG
TGACAGGTTTGTTATTGGTGCAGCAGAAACAATGATTGCAAGAGCTACGGACGATCTCACTTTTGATCAAATGAAAAAGG
TTTTAACTTCGGTATATTCAGCTGTGAGGGTATAG

Upstream 100 bases:

>100_bases
AACCCGAATGCTGGTAAGGAGCATCATTTTACTGCTTATCGCTTGCTCAGTCAGTCAAACAAGCCTGTGACCTTGGCTTG
TAAAGGGTAGTTGGCTGAAA

Downstream 100 bases:

>100_bases
GTATGAAAAAATGAATGTTGGTCGTTTATTATGCGTGACTGTTATATATCAATTCCCTTGGTATGCAAATAAGGGATATT
TAAATGGTCTTTATGTGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: DNA Methylase; DNA Methylase Containing A Zn-Ribbon Module; Adenine-Specific DNA Methylase Containing A Zn-Ribbon

Number of amino acids: Translated: 704; Mature: 704

Protein sequence:

>704_residues
MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVFRAIVLGALSPPGKGIWDVFY
EKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVSSFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDP
HTGGIIPVLYYFWVKTVFTPTGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP
VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAKKRLEEENLPLPDSPVREGHN
TNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQEQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPE
RTPLENSVWGNKKSSGTFSTLFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL
VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSGEGEVQHKDPLVFSRQLSSVF
SEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVVTAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDK
MEIKDVCRAVDTLAGKFEKAGMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV

Sequences:

>Translated_704_residues
MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVFRAIVLGALSPPGKGIWDVFY
EKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVSSFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDP
HTGGIIPVLYYFWVKTVFTPTGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP
VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAKKRLEEENLPLPDSPVREGHN
TNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQEQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPE
RTPLENSVWGNKKSSGTFSTLFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL
VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSGEGEVQHKDPLVFSRQLSSVF
SEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVVTAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDK
MEIKDVCRAVDTLAGKFEKAGMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV
>Mature_704_residues
MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVFRAIVLGALSPPGKGIWDVFY
EKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVSSFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDP
HTGGIIPVLYYFWVKTVFTPTGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP
VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAKKRLEEENLPLPDSPVREGHN
TNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQEQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPE
RTPLENSVWGNKKSSGTFSTLFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL
VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSGEGEVQHKDPLVFSRQLSSVF
SEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVVTAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDK
MEIKDVCRAVDTLAGKFEKAGMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV

Specific function: Unknown

COG id: COG1743

COG function: function code L; Adenine-specific DNA methylase containing a Zn-ribbon

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78930; Mature: 78930

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVF
CCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RAIVLGALSPPGKGIWDVFYEKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVS
HHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCHHCCCCCCHHH
SFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDPHTGGIIPVLYYFWVKTVFTP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
TGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP
CCCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAK
CCCCCCCCCCCCEEEHHHHHHCCCCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHH
KRLEEENLPLPDSPVREGHNTNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQ
HHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHH
EQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPERTPLENSVWGNKKSSGTFST
HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
LFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEE
VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSG
EEECCCCCCCCCHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGEVQHKDPLVFSRQLSSVFSEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE
TAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDKMEIKDVCRAVDTLAGKFEKA
EECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV
CCEECCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEKIKDNVGNTHKDASSVLECDFPMIEISEVAEQESWRKEINRPVYHIHKWWATRLGSVF
CCCHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RAIVLGALSPPGKGIWDVFYEKHNFSGKVVLDPFMGSGTTLGEAVKLGAKAVGCDINPVS
HHHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCHHCCCCCCHHH
SFLVRQAFTPVHDSKIKAAFSSLEDKVASEIKYYYRTVDPHTGGIIPVLYYFWVKTVFTP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
TGEEIPLFSRYVFSQNAYPKKKPKAQIVCPKCWGVSEGRYDDTEFICGSCGHEFNPQKGP
CCCCCCHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
VSGQSVTSKDGKLYRIKDLLSEGGSPPKHRMYGVLALRQDGSKIYLPAREQDFALYNEAK
CCCCCCCCCCCCEEEHHHHHHCCCCCCHHHHEEEEEEEECCCEEEECCCCCCHHHHHHHH
KRLEEENLPLPDSPVREGHNTNQARGYNYKYWRDFFNSRQLLCLGMLLKEILNIEDRVIQ
HHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHH
EQMLCLFSGVLEFNNLFCSFKGEGTGAVRHMFSNHILKPERTPLENSVWGNKKSSGTFST
HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
LFESRLLRAKKYLDDPFEVAIKRDLLGKRLGSSKVVASSPVEAKIVESWEELDSAEKGLL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEE
VLNGDSSKLSVPEKSIDAVITDPPYFDFVHYSELSDFFFAWLSPVLKDRYEWFSRADSSG
EEECCCCCCCCCHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGEVQHKDPLVFSRQLSSVFSEACRVLKDTGVLAFSFHHSRPEGWAAIYEAINNAGLAVV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEEE
TAHPVHAELRGASPKTAAKDPISLDAILVCRKREFAIVDKMEIKDVCRAVDTLAGKFEKA
EECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GMTVSNGDRFVIGAAETMIARATDDLTFDQMKKVLTSVYSAVRV
CCEECCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA