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The map label for this gene is qseB [H]

Identifier: 110834862

GI number: 110834862

Start: 2288921

End: 2289586

Strand: Reverse

Name: qseB [H]

Synonym: ABO_2001

Alternate gene names: 110834862

Gene position: 2289586-2288921 (Counterclockwise)

Preceding gene: 110834863

Following gene: 110834861

Centisome position: 73.38

GC content: 54.35

Gene sequence:

>666_bases
ATGCGCCTATTGCTGGTTGAGAATGATGTGCTGCTAGCAGATGGCCTGCAACGTGCGCTCCGGGCTGAAGGCTATACGGT
GGATCATATCGATCGGGGTGATCTGTTGATGCCGGCTCTGGAGGGCGGAGGTTTTCAACTGGTGTTGCTGGATCTGGGAC
TGCCCGGGCTGGATGGTATTGATGCCTTGAAAATCTTGCGGCAAAAGGACAAACAGATCCCGGTAATCATTATTAGTGCC
AGAGATGCACTGGAAGACCGCATCGGGGGCTTGGATTGTGGCGCCGATGATTATCTGGTGAAACCGTTCTCCGCTGTGGA
GATGATTGCGCGGATTCGTGCCCGATTACGGCGTCGTGAACCGCCTGGCTCAGAGACGCTTCATCTCGGTGAGCTGGAGA
TTGATCCTGTGCGTTTTATCGTCACTCGTCGCGGCGAGCTGGTAAATCTGTCGCGGCGGGAGATGAGCCTGTTGATGCAG
CTGTTGCGCCATCGGGGTCGAGTTCTCACCAGAGATCAACTGGAGGGTGGGTTGTATGGCTGGAATGAGGATGTAGAAAG
CAACGCACTGGAAGTCCACATACATCATTTGCGTAAAAAGTTGGGAAGCGACTTGATTCGGACTGTGCGTGGTGTCGGCT
ACAGCCTGCAGGGAACTATGGAATGA

Upstream 100 bases:

>100_bases
CAGGCTGGTCTGTTGTCTACGCTTGCTCTGCTTCAGGGAAAAGACGCTGAAACCCTGTTGCGAGGGGCAGGTGTACAATA
TTGGATTCAATGGGGGAATG

Downstream 100 bases:

>100_bases
TTTTTTCCATTCGTCGCTTTCTGGTTGTATCACTGTTGCTGGTGATCGCCGGTGGCGGGGTCTTATTGGTCTTTTTGACT
TATCGCACTCTCTATCATGA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRLLLVENDVLLADGLQRALRAEGYTVDHIDRGDLLMPALEGGGFQLVLLDLGLPGLDGIDALKILRQKDKQIPVIIISA
RDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRREPPGSETLHLGELEIDPVRFIVTRRGELVNLSRREMSLLMQ
LLRHRGRVLTRDQLEGGLYGWNEDVESNALEVHIHHLRKKLGSDLIRTVRGVGYSLQGTME

Sequences:

>Translated_221_residues
MRLLLVENDVLLADGLQRALRAEGYTVDHIDRGDLLMPALEGGGFQLVLLDLGLPGLDGIDALKILRQKDKQIPVIIISA
RDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRREPPGSETLHLGELEIDPVRFIVTRRGELVNLSRREMSLLMQ
LLRHRGRVLTRDQLEGGLYGWNEDVESNALEVHIHHLRKKLGSDLIRTVRGVGYSLQGTME
>Mature_221_residues
MRLLLVENDVLLADGLQRALRAEGYTVDHIDRGDLLMPALEGGGFQLVLLDLGLPGLDGIDALKILRQKDKQIPVIIISA
RDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRREPPGSETLHLGELEIDPVRFIVTRRGELVNLSRREMSLLMQ
LLRHRGRVLTRDQLEGGLYGWNEDVESNALEVHIHHLRKKLGSDLIRTVRGVGYSLQGTME

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=216, Percent_Identity=48.1481481481481, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=45.7013574660633, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=39.3665158371041, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=37.8378378378378, Blast_Score=146, Evalue=9e-37,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=36.6071428571429, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=35.8744394618834, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=32.1100917431193, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=35.3982300884956, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=36.9369369369369, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=32.8888888888889, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=37.6106194690265, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787229, Length=224, Percent_Identity=29.4642857142857, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=27.8969957081545, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=29.2576419213974, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=30.8943089430894, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=102, Percent_Identity=31.3725490196078, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790437, Length=124, Percent_Identity=31.4516129032258, Blast_Score=62, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=104, Percent_Identity=34.6153846153846, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24809; Mature: 24809

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVENDVLLADGLQRALRAEGYTVDHIDRGDLLMPALEGGGFQLVLLDLGLPGLDGI
CEEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCH
DALKILRQKDKQIPVIIISARDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRRE
HHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PPGSETLHLGELEIDPVRFIVTRRGELVNLSRREMSLLMQLLRHRGRVLTRDQLEGGLYG
CCCCCEEEECCEEECCEEEEEECCCCEECCHHHHHHHHHHHHHHCCCEEEHHHHCCCCCC
WNEDVESNALEVHIHHLRKKLGSDLIRTVRGVGYSLQGTME
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure
MRLLLVENDVLLADGLQRALRAEGYTVDHIDRGDLLMPALEGGGFQLVLLDLGLPGLDGI
CEEEEEECCCHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCH
DALKILRQKDKQIPVIIISARDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRRE
HHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PPGSETLHLGELEIDPVRFIVTRRGELVNLSRREMSLLMQLLRHRGRVLTRDQLEGGLYG
CCCCCEEEECCEEECCEEEEEECCCCEECCHHHHHHHHHHHHHHCCCEEEHHHHCCCCCC
WNEDVESNALEVHIHHLRKKLGSDLIRTVRGVGYSLQGTME
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]