| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834780
Identifier: 110834780
GI number: 110834780
Start: 2196355
End: 2196945
Strand: Direct
Name: 110834780
Synonym: ABO_1919
Alternate gene names: NA
Gene position: 2196355-2196945 (Clockwise)
Preceding gene: 110834779
Following gene: 110834781
Centisome position: 70.39
GC content: 55.5
Gene sequence:
>591_bases ATGACATCATCAAAGGTTCCTTTTTCGCAAGCAGCGGAAAACAACAAAGGCCCGATTCTCCAAGTTTTGCAGCAACACTG TCAGGCCCCCGGGACGCTGCTGGAAATTGGGGCCGGCACCGGACAGCATGCCGCTTGGCTGTCTGCACAGCTACCCCATT TGCAATGGCAGCCCTCTGACGTGGCGCAGAACCTCCCAACCATTCGCCACTGGCTAGGCCAGACACACAGCCTGGCAAAT GCCCCGTTAGCCCTGGATGTGAGCGACCAATGGCCGATTGGTCCTTTTGATTATCTGTTCACGGCGAATACGTTTCACAT CATGCCGCAATCACTGGTCGCCCATTGCATCGCTGAAGGGTGCCGGCATCTCAACACAGAGGGATTGTTCATGGTCTACG GCCCCTTCAACTACGATGATCAGTTCACCAGTGATTCCAATCGACAGTTTGAACGTTGGCTGAAATCCACTGATACGCAG CGGGGGATCCGCGACAAGGAATGGGTAGAGCAGGAGTTTGCCCAGCACGGTCGGCAATGTCTTGCGGACCATGCCATGCC AGCGAATAACCGGGTGCTGGTGTTCGGGTAA
Upstream 100 bases:
>100_bases AGAAATACATGAACAAAAGTAAGGGGTGAGGAAATAACGCGTTTCCCTTGCCAAAAAAGGCCGTTGATGATGCCATGACC TCTCACTCACAGGAGCAGCC
Downstream 100 bases:
>100_bases AACGGCATGCTGAAAGTCAACGAAAGCGAATACCGCACATGCTCGGTTTCGAGTGAATAACCCCGAGCCTCATGGCCATC ACGCCAATGATACATACCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MTSSKVPFSQAAENNKGPILQVLQQHCQAPGTLLEIGAGTGQHAAWLSAQLPHLQWQPSDVAQNLPTIRHWLGQTHSLAN APLALDVSDQWPIGPFDYLFTANTFHIMPQSLVAHCIAEGCRHLNTEGLFMVYGPFNYDDQFTSDSNRQFERWLKSTDTQ RGIRDKEWVEQEFAQHGRQCLADHAMPANNRVLVFG
Sequences:
>Translated_196_residues MTSSKVPFSQAAENNKGPILQVLQQHCQAPGTLLEIGAGTGQHAAWLSAQLPHLQWQPSDVAQNLPTIRHWLGQTHSLAN APLALDVSDQWPIGPFDYLFTANTFHIMPQSLVAHCIAEGCRHLNTEGLFMVYGPFNYDDQFTSDSNRQFERWLKSTDTQ RGIRDKEWVEQEFAQHGRQCLADHAMPANNRVLVFG >Mature_195_residues TSSKVPFSQAAENNKGPILQVLQQHCQAPGTLLEIGAGTGQHAAWLSAQLPHLQWQPSDVAQNLPTIRHWLGQTHSLANA PLALDVSDQWPIGPFDYLFTANTFHIMPQSLVAHCIAEGCRHLNTEGLFMVYGPFNYDDQFTSDSNRQFERWLKSTDTQR GIRDKEWVEQEFAQHGRQCLADHAMPANNRVLVFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI93102387, Length=199, Percent_Identity=33.1658291457286, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI71998087, Length=198, Percent_Identity=29.7979797979798, Blast_Score=88, Evalue=3e-18, Organism=Drosophila melanogaster, GI28574095, Length=196, Percent_Identity=29.0816326530612, Blast_Score=84, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22018; Mature: 21887
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSKVPFSQAAENNKGPILQVLQQHCQAPGTLLEIGAGTGQHAAWLSAQLPHLQWQPSD CCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCHH VAQNLPTIRHWLGQTHSLANAPLALDVSDQWPIGPFDYLFTANTFHIMPQSLVAHCIAEG HHHCCHHHHHHHCCHHHHCCCCEEEECCCCCCCCCHHHHEECCHHEECHHHHHHHHHHHH CRHLNTEGLFMVYGPFNYDDQFTSDSNRQFERWLKSTDTQRGIRDKEWVEQEFAQHGRQC HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH LADHAMPANNRVLVFG HHHCCCCCCCEEEEEC >Mature Secondary Structure TSSKVPFSQAAENNKGPILQVLQQHCQAPGTLLEIGAGTGQHAAWLSAQLPHLQWQPSD CCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCHH VAQNLPTIRHWLGQTHSLANAPLALDVSDQWPIGPFDYLFTANTFHIMPQSLVAHCIAEG HHHCCHHHHHHHCCHHHHCCCCEEEECCCCCCCCCHHHHEECCHHEECHHHHHHHHHHHH CRHLNTEGLFMVYGPFNYDDQFTSDSNRQFERWLKSTDTQRGIRDKEWVEQEFAQHGRQC HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH LADHAMPANNRVLVFG HHHCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA