| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834429
Identifier: 110834429
GI number: 110834429
Start: 1790878
End: 1791633
Strand: Direct
Name: 110834429
Synonym: ABO_1568
Alternate gene names: NA
Gene position: 1790878-1791633 (Clockwise)
Preceding gene: 110834426
Following gene: 110834430
Centisome position: 57.4
GC content: 55.16
Gene sequence:
>756_bases ATGTCACACAGCACAGAAGTTTTTCGTTCACTATTATCTTCCACGCTACAACAAGGGCGCGGTATAGCCACTAAAGGCCA TAGCAAACATCCGCAAGAGCCGCTGGAGCTCTATGAAATGGAGGGTTGCCCTTTCTGTCGGCTGGTTCGCGAGGCGCTAA CTGATTTAGATATAGACGTAATGATCCTCCCCTGCCCTAAGGGGGGCGACCGTTACCGACCGCTGGTAGAACGCTTAGGC GGCAAGCAGCAATTCCCCTATTTGATGGACCCCAATACCGGCGAAGCCCTTTATGGATCTGCCGACATTATCGAGTATCT CTATCAGCAGTATGGAGGCCGTCCTGCCCCGAAAAGTTGGCAGCTACGTCTACGCACAGCCGCCGCAATTGCCGCCTCCG CTCCCCGCGGTGGTCATGGCATTCGCACCCGGAGCAGCCGCGCCCCGGAGCAAGCTCTGGAACTGTATTCGTTCGAAGCC AGCCCCTTTGCCCGTTTGGTTCGCGAGCGATTGACTGAATTGCAGCTCCCTTACTTGCTGCGCCAGTGCGGCCGTGATCA GTGGAAGGATTGGGTGTTACCGGTGGTCCGTAAGTCTCTCGATATGGACTACTCCCCTAGTCAACGCAACCGGATAGACC TACTGGCTCGGGCTGGAAGGATTGCCGTTCCCTATCTGGTAGATCCGAATACCGGCGAAGAGCTGTTCGAATCCGAAGCT ATTCTTCACTATCTGGATCAGACTTACGGCAACTAA
Upstream 100 bases:
>100_bases GCAAGACCGCAAGCCGTTGGTAAATCACCCGTCACTACGGCCAATGAATGGCTTCTTGCACATGCTAATGTCGCTGCAAT TCGTTTCAGGAGTACTCGCC
Downstream 100 bases:
>100_bases TGCCGGCACTGCCTTGCAGCCATGAGCGGGCACCGATAAATGGTGCCCTTTGCTCTTCTACACCACACTTTTTAGTGCTA TATATTCCAGTCACAGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSHSTEVFRSLLSSTLQQGRGIATKGHSKHPQEPLELYEMEGCPFCRLVREALTDLDIDVMILPCPKGGDRYRPLVERLG GKQQFPYLMDPNTGEALYGSADIIEYLYQQYGGRPAPKSWQLRLRTAAAIAASAPRGGHGIRTRSSRAPEQALELYSFEA SPFARLVRERLTELQLPYLLRQCGRDQWKDWVLPVVRKSLDMDYSPSQRNRIDLLARAGRIAVPYLVDPNTGEELFESEA ILHYLDQTYGN
Sequences:
>Translated_251_residues MSHSTEVFRSLLSSTLQQGRGIATKGHSKHPQEPLELYEMEGCPFCRLVREALTDLDIDVMILPCPKGGDRYRPLVERLG GKQQFPYLMDPNTGEALYGSADIIEYLYQQYGGRPAPKSWQLRLRTAAAIAASAPRGGHGIRTRSSRAPEQALELYSFEA SPFARLVRERLTELQLPYLLRQCGRDQWKDWVLPVVRKSLDMDYSPSQRNRIDLLARAGRIAVPYLVDPNTGEELFESEA ILHYLDQTYGN >Mature_250_residues SHSTEVFRSLLSSTLQQGRGIATKGHSKHPQEPLELYEMEGCPFCRLVREALTDLDIDVMILPCPKGGDRYRPLVERLGG KQQFPYLMDPNTGEALYGSADIIEYLYQQYGGRPAPKSWQLRLRTAAAIAASAPRGGHGIRTRSSRAPEQALELYSFEAS PFARLVRERLTELQLPYLLRQCGRDQWKDWVLPVVRKSLDMDYSPSQRNRIDLLARAGRIAVPYLVDPNTGEELFESEAI LHYLDQTYGN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28470; Mature: 28339
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00195 GLUTAREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSTEVFRSLLSSTLQQGRGIATKGHSKHPQEPLELYEMEGCPFCRLVREALTDLDIDV CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEE MILPCPKGGDRYRPLVERLGGKQQFPYLMDPNTGEALYGSADIIEYLYQQYGGRPAPKSW EEEECCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCH QLRLRTAAAIAASAPRGGHGIRTRSSRAPEQALELYSFEASPFARLVRERLTELQLPYLL HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH RQCGRDQWKDWVLPVVRKSLDMDYSPSQRNRIDLLARAGRIAVPYLVDPNTGEELFESEA HHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEECEEECCCCCHHHHHHHH ILHYLDQTYGN HHHHHHHHCCC >Mature Secondary Structure SHSTEVFRSLLSSTLQQGRGIATKGHSKHPQEPLELYEMEGCPFCRLVREALTDLDIDV CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEE MILPCPKGGDRYRPLVERLGGKQQFPYLMDPNTGEALYGSADIIEYLYQQYGGRPAPKSW EEEECCCCCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCH QLRLRTAAAIAASAPRGGHGIRTRSSRAPEQALELYSFEASPFARLVRERLTELQLPYLL HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH RQCGRDQWKDWVLPVVRKSLDMDYSPSQRNRIDLLARAGRIAVPYLVDPNTGEELFESEA HHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEEECEEECCCCCHHHHHHHH ILHYLDQTYGN HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA