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The map label for this gene is ydaL [H]

Identifier: 110834430

GI number: 110834430

Start: 1792484

End: 1793074

Strand: Direct

Name: ydaL [H]

Synonym: ABO_1569

Alternate gene names: 110834430

Gene position: 1792484-1793074 (Clockwise)

Preceding gene: 110834429

Following gene: 110834434

Centisome position: 57.45

GC content: 54.15

Gene sequence:

>591_bases
ATGGCCTCCGATGATGACCTTTTCCGCCGAGAAATGGCAGATGTAACGCCGATTAAACCGGACAACCGAGTTCAGGAACG
TGCGCCCCATCGCAAAGACTCTATCCGCGAACAATTACGCCGCGCCGCCGCCGTTGACGACCGTAAAGACAACAACCCAC
TAACGGTCCCTGAGTTAGTACCACAAATCGGTCCTCTGGACATCGTTGGGCTGAAGAAAGATGGGGTGCAGGAAGGCGTT
TATCGCAAATTACGCTTGGGTAAATATGATGCTCAGGATGTACTGGACCTGCACCGAGTTCGCCTCCTGGAGGCACGCAA
TCAGGTCCAGGCGTTTCTAGAAAACGCCCACAACAATGGCATGCGGACCGTCTTGATCAGCCACGGCAAGGGTCTTCATA
GTGAGCGCCCCGGGTTTCTGAAAAGCTATGTGATGCACTGGCTGGAAGAAAGTCGCCTAGTACTAGCCTACCACAGCACC
CCAGCCAACCGTGGTGGCAGCGGCGCTACCCAAGTGCTGGTGCGCAAAAACAGTCAAGCAAGGCAGAATAACCGTGAGTT
TTTTATCGAAGCCGGAAAACAGCAACGCTGA

Upstream 100 bases:

>100_bases
TTCCATCTCACCCCTCCCAAAGAACCTCTCACTGCCAGTTTCCGCCCGCTTTGTGTACCATTACACATCAGTCGAAATGA
AACTTATGGAGCACAGTTCC

Downstream 100 bases:

>100_bases
CAGAAAAGTAACAAACCAACACTTACATTAAAGGTTATTGCCAGAGCTACGCAGCCTCGCCGTTAAGTGCAAAACGCGGG
ATCGTCCTTGAGAAGCAGAA

Product: Smr domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MASDDDLFRREMADVTPIKPDNRVQERAPHRKDSIREQLRRAAAVDDRKDNNPLTVPELVPQIGPLDIVGLKKDGVQEGV
YRKLRLGKYDAQDVLDLHRVRLLEARNQVQAFLENAHNNGMRTVLISHGKGLHSERPGFLKSYVMHWLEESRLVLAYHST
PANRGGSGATQVLVRKNSQARQNNREFFIEAGKQQR

Sequences:

>Translated_196_residues
MASDDDLFRREMADVTPIKPDNRVQERAPHRKDSIREQLRRAAAVDDRKDNNPLTVPELVPQIGPLDIVGLKKDGVQEGV
YRKLRLGKYDAQDVLDLHRVRLLEARNQVQAFLENAHNNGMRTVLISHGKGLHSERPGFLKSYVMHWLEESRLVLAYHST
PANRGGSGATQVLVRKNSQARQNNREFFIEAGKQQR
>Mature_195_residues
ASDDDLFRREMADVTPIKPDNRVQERAPHRKDSIREQLRRAAAVDDRKDNNPLTVPELVPQIGPLDIVGLKKDGVQEGVY
RKLRLGKYDAQDVLDLHRVRLLEARNQVQAFLENAHNNGMRTVLISHGKGLHSERPGFLKSYVMHWLEESRLVLAYHSTP
ANRGGSGATQVLVRKNSQARQNNREFFIEAGKQQR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=192, Percent_Identity=37.5, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 22377; Mature: 22246

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDDDLFRREMADVTPIKPDNRVQERAPHRKDSIREQLRRAAAVDDRKDNNPLTVPELV
CCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHH
PQIGPLDIVGLKKDGVQEGVYRKLRLGKYDAQDVLDLHRVRLLEARNQVQAFLENAHNNG
HCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MRTVLISHGKGLHSERPGFLKSYVMHWLEESRLVLAYHSTPANRGGSGATQVLVRKNSQA
CEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHEEECCCHH
RQNNREFFIEAGKQQR
HHCCCEEEEECCCCCC
>Mature Secondary Structure 
ASDDDLFRREMADVTPIKPDNRVQERAPHRKDSIREQLRRAAAVDDRKDNNPLTVPELV
CCCHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHH
PQIGPLDIVGLKKDGVQEGVYRKLRLGKYDAQDVLDLHRVRLLEARNQVQAFLENAHNNG
HCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MRTVLISHGKGLHSERPGFLKSYVMHWLEESRLVLAYHSTPANRGGSGATQVLVRKNSQA
CEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHEEECCCHH
RQNNREFFIEAGKQQR
HHCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]