| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834363
Identifier: 110834363
GI number: 110834363
Start: 1714931
End: 1716112
Strand: Direct
Name: 110834363
Synonym: ABO_1502
Alternate gene names: NA
Gene position: 1714931-1716112 (Clockwise)
Preceding gene: 110834362
Following gene: 110834364
Centisome position: 54.96
GC content: 56.43
Gene sequence:
>1182_bases GTGGCCGCGCCGTGCATGCAAGCATCAGGGCCTCGCTCGCTAACCAATGCAGACCTAATAATGAAAAAAATCATCGCCCT TGCCGTTATTGTTACCCTGGCCGCCTACCTTTTATTCTGGCCCGTCAGCATAGAGCCTGTTGCTTGGCAGGCGCCGAAAG CCCCAGCTCTGGATGGTCCCTTCGCCACTAACACCGCCCTTCGCAACAGCAAAATCATCGGCGAAGATCAGGGCACTGGT CCGGAGGACGTGGCTATCAATGATGATGGTTACCTATACGTGGGGTATGACGATGGCCGCATCGTTCGTTTCGACCCAAA CGGCCAAAACCCTGACTTGATTGCCAATACTGAAGGGCGCCCTCTTGGATTGGATTTTTCCCCCTCCGGAGACCTAATCG TTGCCGATGGTTACAAAGGGCTCTTGAGTGTCAGTGCTAGTGGCGCCATCACCATATTGAGTACCAGCGCCAATGGTCTG GACTACCGCTTCACCGATGATGTGGACGTGGATAGCAACGGTATCGCCTATTTCTCCGATGCCTCCAGCAAATTTGGCCC CGCCATGCACGCCCGCGACGACATCATGGAGCACGGCGGCCACGGGCGGCTGTTGCGTTATGACCCGAATACAGAACAGG CCGAAGTGTTACTTGACGGCCTGCAGTTCGCCAACGGCATCGCCCTTTCCCAGAATGAAGACTTCGTACTGGTTACCGAA ACAGGCAACTACCGCATCGTTCGCTACTGGCTCAAAGGGGAGAAAGCCGGCAGCCACGATATCTTTATGGACAACCTGCC CGGCATCCCTGATGGCATTTCGGCGAACGGCGAAGGCACTTTCTGGCTTGCCCTATTCAGCCCCCGCAATGCCATTCTCG ACAGCCTCTCCGACAAGCCTCTGCTTCGCAAAGTCGCCTTGCGCATGCCCAGCTTTCTGCAACCCCAAACAGTAGCCCAC GGCTTTGTACTCGGCCTTGATGAGCAAGGGCAAGTCACTCACAACCTGCAAGATAACAGCGACGGCGCTTTCGCTCCCAT CACCAGCGCGGAGCAACACGGTAACACCCTGTACCTGGGCAGCCTCACCGAACCTCGCTTCGCCGCTTTCACCCTGCCCG GCACAGCAACAGCAACAGCAACAGCAACAGCAACAGTCCACGATGGAGCCAACAAACAATGA
Upstream 100 bases:
>100_bases AAACCCAATACTCACGGTGCATGAAGCGTCCTTTAGCGAAACAGATTTTTCCCACTATCCTAGCCACGTTTATTGCCAAT GATTAACATCTTGCATTTGC
Downstream 100 bases:
>100_bases GCACACTAAACGCGGCTTTTATCGGCCTTGGCACCATGGGCTACCCCATGGCTGGCCACCTGGCCGAAGCAGGCATTGCC ATGACCGTTTACAACCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Strictosidine Synthase Family Protein; Gluconolactonase; Inner-Membrane Translocator; ABC Transporter Permease Protein; Strictosidine Synthase Conserved Region; Permease Protein Of Sugar ABC Transporter; ABC Transporter; SMP-30/Gluconolaconase/LRE Domain Protein; Strictosidine Synthase Subfamily
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MAAPCMQASGPRSLTNADLIMKKIIALAVIVTLAAYLLFWPVSIEPVAWQAPKAPALDGPFATNTALRNSKIIGEDQGTG PEDVAINDDGYLYVGYDDGRIVRFDPNGQNPDLIANTEGRPLGLDFSPSGDLIVADGYKGLLSVSASGAITILSTSANGL DYRFTDDVDVDSNGIAYFSDASSKFGPAMHARDDIMEHGGHGRLLRYDPNTEQAEVLLDGLQFANGIALSQNEDFVLVTE TGNYRIVRYWLKGEKAGSHDIFMDNLPGIPDGISANGEGTFWLALFSPRNAILDSLSDKPLLRKVALRMPSFLQPQTVAH GFVLGLDEQGQVTHNLQDNSDGAFAPITSAEQHGNTLYLGSLTEPRFAAFTLPGTATATATATATVHDGANKQ
Sequences:
>Translated_393_residues MAAPCMQASGPRSLTNADLIMKKIIALAVIVTLAAYLLFWPVSIEPVAWQAPKAPALDGPFATNTALRNSKIIGEDQGTG PEDVAINDDGYLYVGYDDGRIVRFDPNGQNPDLIANTEGRPLGLDFSPSGDLIVADGYKGLLSVSASGAITILSTSANGL DYRFTDDVDVDSNGIAYFSDASSKFGPAMHARDDIMEHGGHGRLLRYDPNTEQAEVLLDGLQFANGIALSQNEDFVLVTE TGNYRIVRYWLKGEKAGSHDIFMDNLPGIPDGISANGEGTFWLALFSPRNAILDSLSDKPLLRKVALRMPSFLQPQTVAH GFVLGLDEQGQVTHNLQDNSDGAFAPITSAEQHGNTLYLGSLTEPRFAAFTLPGTATATATATATVHDGANKQ >Mature_392_residues AAPCMQASGPRSLTNADLIMKKIIALAVIVTLAAYLLFWPVSIEPVAWQAPKAPALDGPFATNTALRNSKIIGEDQGTGP EDVAINDDGYLYVGYDDGRIVRFDPNGQNPDLIANTEGRPLGLDFSPSGDLIVADGYKGLLSVSASGAITILSTSANGLD YRFTDDVDVDSNGIAYFSDASSKFGPAMHARDDIMEHGGHGRLLRYDPNTEQAEVLLDGLQFANGIALSQNEDFVLVTET GNYRIVRYWLKGEKAGSHDIFMDNLPGIPDGISANGEGTFWLALFSPRNAILDSLSDKPLLRKVALRMPSFLQPQTVAHG FVLGLDEQGQVTHNLQDNSDGAFAPITSAEQHGNTLYLGSLTEPRFAAFTLPGTATATATATATVHDGANKQ
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI24308201, Length=376, Percent_Identity=34.3085106382979, Blast_Score=179, Evalue=4e-45, Organism=Caenorhabditis elegans, GI17534469, Length=354, Percent_Identity=27.9661016949153, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17542364, Length=356, Percent_Identity=26.9662921348315, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193207213, Length=336, Percent_Identity=27.0833333333333, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI17137194, Length=250, Percent_Identity=35.6, Blast_Score=126, Evalue=3e-29, Organism=Drosophila melanogaster, GI24650914, Length=369, Percent_Identity=27.3712737127371, Blast_Score=113, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41958; Mature: 41827
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPCMQASGPRSLTNADLIMKKIIALAVIVTLAAYLLFWPVSIEPVAWQAPKAPALDGP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCCCCC FATNTALRNSKIIGEDQGTGPEDVAINDDGYLYVGYDDGRIVRFDPNGQNPDLIANTEGR CCCCCHHCCCEEECCCCCCCCCCEEECCCCEEEEEECCCEEEEECCCCCCCCEEECCCCC PLGLDFSPSGDLIVADGYKGLLSVSASGAITILSTSANGLDYRFTDDVDVDSNGIAYFSD EEEEEECCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEEEC ASSKFGPAMHARDDIMEHGGHGRLLRYDPNTEQAEVLLDGLQFANGIALSQNEDFVLVTE CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEECCCCEEEEEE TGNYRIVRYWLKGEKAGSHDIFMDNLPGIPDGISANGEGTFWLALFSPRNAILDSLSDKP CCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHCCCCCH LLRKVALRMPSFLQPQTVAHGFVLGLDEQGQVTHNLQDNSDGAFAPITSAEQHGNTLYLG HHHHHHHHCCCCCCCHHHCCEEEEEECCCCCEEECCCCCCCCCEEECCCHHHCCCEEEEE SLTEPRFAAFTLPGTATATATATATVHDGANKQ CCCCCCEEEEECCCCCCEEEEEEEEECCCCCCC >Mature Secondary Structure AAPCMQASGPRSLTNADLIMKKIIALAVIVTLAAYLLFWPVSIEPVAWQAPKAPALDGP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCCCCC FATNTALRNSKIIGEDQGTGPEDVAINDDGYLYVGYDDGRIVRFDPNGQNPDLIANTEGR CCCCCHHCCCEEECCCCCCCCCCEEECCCCEEEEEECCCEEEEECCCCCCCCEEECCCCC PLGLDFSPSGDLIVADGYKGLLSVSASGAITILSTSANGLDYRFTDDVDVDSNGIAYFSD EEEEEECCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCEEEECCCCCCCCCCEEEEEC ASSKFGPAMHARDDIMEHGGHGRLLRYDPNTEQAEVLLDGLQFANGIALSQNEDFVLVTE CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEECCCCEEEEEE TGNYRIVRYWLKGEKAGSHDIFMDNLPGIPDGISANGEGTFWLALFSPRNAILDSLSDKP CCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHCCCCCH LLRKVALRMPSFLQPQTVAHGFVLGLDEQGQVTHNLQDNSDGAFAPITSAEQHGNTLYLG HHHHHHHHCCCCCCCHHHCCEEEEEECCCCCEEECCCCCCCCCEEECCCHHHCCCEEEEE SLTEPRFAAFTLPGTATATATATATVHDGANKQ CCCCCCEEEEECCCCCCEEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA