Click here to switch to the map view.

The map label for this gene is dbh1 [H]

Identifier: 110834074

GI number: 110834074

Start: 1380246

End: 1380518

Strand: Direct

Name: dbh1 [H]

Synonym: ABO_1213

Alternate gene names: 110834074

Gene position: 1380246-1380518 (Clockwise)

Preceding gene: 110834073

Following gene: 110834075

Centisome position: 44.24

GC content: 49.82

Gene sequence:

>273_bases
GTGAATAAATCAGAGTTGATTGATGCGATTGCCGCTAGCGCGGATATTTCCAAAGCCGACGCTGGTCGCGCTCTGGATTC
TACTTTGGAAGCGGTAACTGGTGCCCTGAAAAATGGTGACAGCGTTTCTCTAGTAGGTTTTGGTACTTTTGCTGTTAAGC
GTCGTGAAGCTCGCGATGGTCGTAACCCGCAAACAGGTCAGACTATCAAAATAGCTGCTGCCAACGTGCCGGGCTTCAAA
GCGGGTAAAGCGCTGAAAGATGCGGTGAACTAA

Upstream 100 bases:

>100_bases
TCTTGACGCCCCTAGTACCCGTTGGTATAAAGGCGGCCTTGCATAAGGAGAGTGCATCCGCCTCGACCATAAAACCGGAA
AATAGAGAAAGGGGAACTTT

Downstream 100 bases:

>100_bases
ACTGTTTGCAGGAGCGGTAGTTCAGCTGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGC
TCCGCCAGTTTGAGAAAGCG

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDGRNPQTGQTIKIAAANVPGFK
AGKALKDAVN

Sequences:

>Translated_90_residues
MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDGRNPQTGQTIKIAAANVPGFK
AGKALKDAVN
>Mature_90_residues
MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDGRNPQTGQTIKIAAANVPGFK
AGKALKDAVN

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=74.4444444444444, Blast_Score=130, Evalue=2e-32,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=66.2921348314607, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=37.3626373626374, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=37.0786516853933, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9200; Mature: 9200

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDG
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
RNPQTGQTIKIAAANVPGFKAGKALKDAVN
CCCCCCCEEEEEECCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MNKSELIDAIAASADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARDG
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
RNPQTGQTIKIAAANVPGFKAGKALKDAVN
CCCCCCCEEEEEECCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7867950; 10984043; 6793399 [H]