| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is lon [H]
Identifier: 110834073
GI number: 110834073
Start: 1377666
End: 1380062
Strand: Direct
Name: lon [H]
Synonym: ABO_1212
Alternate gene names: 110834073
Gene position: 1377666-1380062 (Clockwise)
Preceding gene: 110834072
Following gene: 110834074
Centisome position: 44.15
GC content: 49.56
Gene sequence:
>2397_bases GTGCTGAAAGATATTCCGCTTTTACCGCTGCGTGATGTAGTAGTGTACCCGCACATGGTTATTCCGCTGTTTGTTGGCAG GGAAAAATCCATTGCGGCTCTCGAAGCTGCGATGGCCGCCGATAAGCAGATTATGCTGGTAGCCCAGCGTAATGCTTCCG ATGACGATCCATCTGTGGATGACGTTTACCGGGTGGGCACTATTTCCACCATTCTTCAGTTGCTTAAATTGCCCGACGGG ACGGTTAAGGTTTTGGTTGAAGGCGGTCAACGTGCGCATTTGGCCAAGGCCGAATTTGGCGACAATGGCGCAGTTGCGGA TGTCCGCGAACTGGAAGAAGGATTGCCTGAAGAGAGCGAACAGGATGCGCTATCTCGTTCTTTGCAAGGTCAGTTTGAAG ACTATGTGAAACTGTCAAAGAAAGTGGCTCCAGAGGTTACCGGCTCCGTTTCTTCTATTGATGAAGTTAGTCGCTTGGCC GATACCATTGCCGCCCATTTACAGCTCAAGCTTGAAGAAAAGCAAGATGTGTTGGAAATGGTAGACGTGCGAGAGCGCGT GGAGCATTTGATTGCGCTGATGGAATCAGACATCGATGTGCTGAAAGTAGAAAAGCGCATTCGTGGCCGCGTAAAGAAGC AGATGGAGAAAAGCCAGCGCGAGTACTATCTGAACGAACAGATGAAAGCCATCCAGAAAGAGTTAGGCGATCTGGAAGAC GGTGGTAACGACCTAGACGATTTGGAAAAGAAAATTGACAGTGCGGGCATGCCTAAAGAAGCCCATGACAAGGCACTGGC TGAACTGAATAAACTTAAGATGATGTCACCCATGTCAGCGGAAGCCACGGTGGTACGCGGATACCTTGACTGGATGACGT CGGTGCCATGGAAAAAGCGCAGCCGAGTTCGTCACGATCTTAAATATGCGAAAGAGGTTTTGGACCGGGATCATTACGGT TTAGAAGATGTTAAAGACCGCGTGCTGGAATTTCTTGCAGTCCAAAGTCGGGTAGGCAAAGTGAAAGGGCCGGTGTTGTG TTTGGTCGGCCCGCCGGGTGTCGGCAAGACTTCGTTAGGACAATCCATTGCCAGTGCAACCAACCGAAAGTTTGTGCGCA TGGCTCTGGGTGGCGTTCGAGATGAAGCTGAAATTCGTGGCCATCGCCGTACTTATATTGGCTCCCTACCTGGTAAGGTA ATTCAGAAAATTTCTAAAGTGGGAGTGCGTAACCCGCTGTTTCTATTTGATGAAATAGACAAGATGGGCATGGATAGTCG TGGCGATCCAGCATCTGCTTTGTTGGAAGTGCTCGATCCAGAGCAGAATGATACGTTCAGCGATCATTACTTGGAAGTGG ATTACAATCTGTCTGAAACGTTGTTTATCTGTACTTCTAATTCCATGAATATTCCAGCGCCACTGCTGGATCGCATGGAG GTGATTCGCCTTCCTGGTTACACAGAGGAAGAAAAGATCAATATTGCTTCGCAGTATCTGATTCCCAAGCAAATCAAAAA CAACGGTTTGAAAAAAGGTGAGCTGCTTTTTGATGAAGCCGTGTTACGGTACATCGTGCGTCATTACAGCCGTGAAGCGG GTGTGCGTGGTCTCGAACGTGAGATCAGCAAGATCTGCCGCAAAGTAGTGAAGGAACATTTGCTAAGCGGCGAGGCCAAA ACAGTCACCATGACCGAAGAGCTGCTTGAGCATTATCTTGGTGTGCGTAAGTTCAGTTTTGGTCGTGCTGAAGAGCAAGA TCAGATCGGGCAGGTAACGGGACTGGCTTGGACATCCGTTGGTGGAGAGCTGCTCACTATTGAAAGCGTTTCTACACCGG GTAAAGGACGTGTGATTTCTACAGGCTCCCTTGGTGATGTGATGCAGGAATCTATTCAAGCTGCATGGACAGTGGTTAAA AGCCGCGCAAGCACCTTGGGTATTCGGCGCCGAGCCTTGGATCGTAACGATCTGCACATGCATGTCCCCGAAGGGGCAAC GCCGAAAGACGGCCCCAGTGCGGGTGTGGGTATGTGCACGGCCATGGTGTCTGTGCTTACGGGCATTCCGGTACGTGCTG ATGTGGCGATGACCGGTGAGATTACTCTGCGTGGGCAGGTGCTACCAATTGGTGGCCTCAAAGAGAAATTACTTGCTGCC CATCGTGGTGGAATTAAGACAGTATTGATTCCAGATGAGAATGAGCGGGACCTCAAAGAGATCCCCGATAATATCAAGGC GTCCTTGGATATTCGACCAGTAAAATGGATTGACCAGGTACTTGATGTGGCTCTAAGTCGTCAACCAAGCCCGCTTTCTG AAGCGGAATTGGAAGAAGATTTGGCGTTAGCAGATGAGAAAAACCAGGAAGGTAACAAGCGTCCTAGTACTCATTAA
Upstream 100 bases:
>100_bases ATTTACGAAAACAACGAGCAGTCTTCCAAGGTCGCGCCGGATTGAGATCTGGACAGAGTCCGGATCCGTCCTTGTGCAAC CTAAGTCATAGAGGCAATAC
Downstream 100 bases:
>100_bases TAGATCACTTTTGAACATTTTAAATAGTTGATCTGCAAGGTATTTTCAATACGTTTAACTTGGGTGAGATCGTACTTTTC CTTTCTTGACGCCCCTAGTA
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MLKDIPLLPLRDVVVYPHMVIPLFVGREKSIAALEAAMAADKQIMLVAQRNASDDDPSVDDVYRVGTISTILQLLKLPDG TVKVLVEGGQRAHLAKAEFGDNGAVADVRELEEGLPEESEQDALSRSLQGQFEDYVKLSKKVAPEVTGSVSSIDEVSRLA DTIAAHLQLKLEEKQDVLEMVDVRERVEHLIALMESDIDVLKVEKRIRGRVKKQMEKSQREYYLNEQMKAIQKELGDLED GGNDLDDLEKKIDSAGMPKEAHDKALAELNKLKMMSPMSAEATVVRGYLDWMTSVPWKKRSRVRHDLKYAKEVLDRDHYG LEDVKDRVLEFLAVQSRVGKVKGPVLCLVGPPGVGKTSLGQSIASATNRKFVRMALGGVRDEAEIRGHRRTYIGSLPGKV IQKISKVGVRNPLFLFDEIDKMGMDSRGDPASALLEVLDPEQNDTFSDHYLEVDYNLSETLFICTSNSMNIPAPLLDRME VIRLPGYTEEEKINIASQYLIPKQIKNNGLKKGELLFDEAVLRYIVRHYSREAGVRGLEREISKICRKVVKEHLLSGEAK TVTMTEELLEHYLGVRKFSFGRAEEQDQIGQVTGLAWTSVGGELLTIESVSTPGKGRVISTGSLGDVMQESIQAAWTVVK SRASTLGIRRRALDRNDLHMHVPEGATPKDGPSAGVGMCTAMVSVLTGIPVRADVAMTGEITLRGQVLPIGGLKEKLLAA HRGGIKTVLIPDENERDLKEIPDNIKASLDIRPVKWIDQVLDVALSRQPSPLSEAELEEDLALADEKNQEGNKRPSTH
Sequences:
>Translated_798_residues MLKDIPLLPLRDVVVYPHMVIPLFVGREKSIAALEAAMAADKQIMLVAQRNASDDDPSVDDVYRVGTISTILQLLKLPDG TVKVLVEGGQRAHLAKAEFGDNGAVADVRELEEGLPEESEQDALSRSLQGQFEDYVKLSKKVAPEVTGSVSSIDEVSRLA DTIAAHLQLKLEEKQDVLEMVDVRERVEHLIALMESDIDVLKVEKRIRGRVKKQMEKSQREYYLNEQMKAIQKELGDLED GGNDLDDLEKKIDSAGMPKEAHDKALAELNKLKMMSPMSAEATVVRGYLDWMTSVPWKKRSRVRHDLKYAKEVLDRDHYG LEDVKDRVLEFLAVQSRVGKVKGPVLCLVGPPGVGKTSLGQSIASATNRKFVRMALGGVRDEAEIRGHRRTYIGSLPGKV IQKISKVGVRNPLFLFDEIDKMGMDSRGDPASALLEVLDPEQNDTFSDHYLEVDYNLSETLFICTSNSMNIPAPLLDRME VIRLPGYTEEEKINIASQYLIPKQIKNNGLKKGELLFDEAVLRYIVRHYSREAGVRGLEREISKICRKVVKEHLLSGEAK TVTMTEELLEHYLGVRKFSFGRAEEQDQIGQVTGLAWTSVGGELLTIESVSTPGKGRVISTGSLGDVMQESIQAAWTVVK SRASTLGIRRRALDRNDLHMHVPEGATPKDGPSAGVGMCTAMVSVLTGIPVRADVAMTGEITLRGQVLPIGGLKEKLLAA HRGGIKTVLIPDENERDLKEIPDNIKASLDIRPVKWIDQVLDVALSRQPSPLSEAELEEDLALADEKNQEGNKRPSTH >Mature_798_residues MLKDIPLLPLRDVVVYPHMVIPLFVGREKSIAALEAAMAADKQIMLVAQRNASDDDPSVDDVYRVGTISTILQLLKLPDG TVKVLVEGGQRAHLAKAEFGDNGAVADVRELEEGLPEESEQDALSRSLQGQFEDYVKLSKKVAPEVTGSVSSIDEVSRLA DTIAAHLQLKLEEKQDVLEMVDVRERVEHLIALMESDIDVLKVEKRIRGRVKKQMEKSQREYYLNEQMKAIQKELGDLED GGNDLDDLEKKIDSAGMPKEAHDKALAELNKLKMMSPMSAEATVVRGYLDWMTSVPWKKRSRVRHDLKYAKEVLDRDHYG LEDVKDRVLEFLAVQSRVGKVKGPVLCLVGPPGVGKTSLGQSIASATNRKFVRMALGGVRDEAEIRGHRRTYIGSLPGKV IQKISKVGVRNPLFLFDEIDKMGMDSRGDPASALLEVLDPEQNDTFSDHYLEVDYNLSETLFICTSNSMNIPAPLLDRME VIRLPGYTEEEKINIASQYLIPKQIKNNGLKKGELLFDEAVLRYIVRHYSREAGVRGLEREISKICRKVVKEHLLSGEAK TVTMTEELLEHYLGVRKFSFGRAEEQDQIGQVTGLAWTSVGGELLTIESVSTPGKGRVISTGSLGDVMQESIQAAWTVVK SRASTLGIRRRALDRNDLHMHVPEGATPKDGPSAGVGMCTAMVSVLTGIPVRADVAMTGEITLRGQVLPIGGLKEKLLAA HRGGIKTVLIPDENERDLKEIPDNIKASLDIRPVKWIDQVLDVALSRQPSPLSEAELEEDLALADEKNQEGNKRPSTH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=775, Percent_Identity=39.0967741935484, Blast_Score=516, Evalue=1e-146, Organism=Homo sapiens, GI21396489, Length=624, Percent_Identity=41.9871794871795, Blast_Score=510, Evalue=1e-144, Organism=Escherichia coli, GI1786643, Length=769, Percent_Identity=70.221066319896, Blast_Score=1091, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=699, Percent_Identity=39.3419170243205, Blast_Score=500, Evalue=1e-141, Organism=Caenorhabditis elegans, GI17556486, Length=736, Percent_Identity=33.695652173913, Blast_Score=414, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6319449, Length=679, Percent_Identity=41.2371134020619, Blast_Score=517, Evalue=1e-147, Organism=Drosophila melanogaster, GI221513036, Length=607, Percent_Identity=43.492586490939, Blast_Score=508, Evalue=1e-144, Organism=Drosophila melanogaster, GI24666867, Length=607, Percent_Identity=43.492586490939, Blast_Score=508, Evalue=1e-144,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 88419; Mature: 88419
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKDIPLLPLRDVVVYPHMVIPLFVGREKSIAALEAAMAADKQIMLVAQRNASDDDPSVD CCCCCCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHH DVYRVGTISTILQLLKLPDGTVKVLVEGGQRAHLAKAEFGDNGAVADVRELEEGLPEESE HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCHH QDALSRSLQGQFEDYVKLSKKVAPEVTGSVSSIDEVSRLADTIAAHLQLKLEEKQDVLEM HHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDVRERVEHLIALMESDIDVLKVEKRIRGRVKKQMEKSQREYYLNEQMKAIQKELGDLED HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GGNDLDDLEKKIDSAGMPKEAHDKALAELNKLKMMSPMSAEATVVRGYLDWMTSVPWKKR CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH SRVRHDLKYAKEVLDRDHYGLEDVKDRVLEFLAVQSRVGKVKGPVLCLVGPPGVGKTSLG HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH QSIASATNRKFVRMALGGVRDEAEIRGHRRTYIGSLPGKVIQKISKVGVRNPLFLFDEID HHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHH KMGMDSRGDPASALLEVLDPEQNDTFSDHYLEVDYNLSETLFICTSNSMNIPAPLLDRME HCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHH VIRLPGYTEEEKINIASQYLIPKQIKNNGLKKGELLFDEAVLRYIVRHYSREAGVRGLER HHCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH EISKICRKVVKEHLLSGEAKTVTMTEELLEHYLGVRKFSFGRAEEQDQIGQVTGLAWTSV HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHCCCHHCC GGELLTIESVSTPGKGRVISTGSLGDVMQESIQAAWTVVKSRASTLGIRRRALDRNDLHM CCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE HVPEGATPKDGPSAGVGMCTAMVSVLTGIPVRADVAMTGEITLRGQVLPIGGLKEKLLAA ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEECEEEEEEEEEECCCHHHHHHHH HRGGIKTVLIPDENERDLKEIPDNIKASLDIRPVKWIDQVLDVALSRQPSPLSEAELEED HCCCEEEEEECCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH LALADEKNQEGNKRPSTH HHHHCCCCCCCCCCCCCC >Mature Secondary Structure MLKDIPLLPLRDVVVYPHMVIPLFVGREKSIAALEAAMAADKQIMLVAQRNASDDDPSVD CCCCCCCCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHH DVYRVGTISTILQLLKLPDGTVKVLVEGGQRAHLAKAEFGDNGAVADVRELEEGLPEESE HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCHH QDALSRSLQGQFEDYVKLSKKVAPEVTGSVSSIDEVSRLADTIAAHLQLKLEEKQDVLEM HHHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDVRERVEHLIALMESDIDVLKVEKRIRGRVKKQMEKSQREYYLNEQMKAIQKELGDLED HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GGNDLDDLEKKIDSAGMPKEAHDKALAELNKLKMMSPMSAEATVVRGYLDWMTSVPWKKR CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH SRVRHDLKYAKEVLDRDHYGLEDVKDRVLEFLAVQSRVGKVKGPVLCLVGPPGVGKTSLG HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH QSIASATNRKFVRMALGGVRDEAEIRGHRRTYIGSLPGKVIQKISKVGVRNPLFLFDEID HHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHH KMGMDSRGDPASALLEVLDPEQNDTFSDHYLEVDYNLSETLFICTSNSMNIPAPLLDRME HCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHH VIRLPGYTEEEKINIASQYLIPKQIKNNGLKKGELLFDEAVLRYIVRHYSREAGVRGLER HHCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH EISKICRKVVKEHLLSGEAKTVTMTEELLEHYLGVRKFSFGRAEEQDQIGQVTGLAWTSV HHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHCCCHHCC GGELLTIESVSTPGKGRVISTGSLGDVMQESIQAAWTVVKSRASTLGIRRRALDRNDLHM CCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE HVPEGATPKDGPSAGVGMCTAMVSVLTGIPVRADVAMTGEITLRGQVLPIGGLKEKLLAA ECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECEEEECEEEEEEEEEECCCHHHHHHHH HRGGIKTVLIPDENERDLKEIPDNIKASLDIRPVKWIDQVLDVALSRQPSPLSEAELEED HCCCEEEEEECCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH LALADEKNQEGNKRPSTH HHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]