| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834045
Identifier: 110834045
GI number: 110834045
Start: 1344684
End: 1345352
Strand: Direct
Name: 110834045
Synonym: ABO_1184
Alternate gene names: NA
Gene position: 1344684-1345352 (Clockwise)
Preceding gene: 110834042
Following gene: 110834046
Centisome position: 43.1
GC content: 54.86
Gene sequence:
>669_bases ATGACCCCATTCAAGGATTTATTGGCGCTGGCGGTGAACCGTAAAGGTTCACTAAAGGCTGTGCAGGCTCAGCTGCCCAC GGTGGCCGATTCAGATACTTTGCGCCATCGTGATGATGCATTTTATATGTCTGCGTTGACTCGCCGCATTTTCCGAGCCG GGCTGAAGCATTCCCTGGTGGACAATAAATGGCCTGCCTTTGAGAAGGCTTTTTTCGGCTTTGACCCACAAAAGCTAGTG TTAATGCCGGACACCATGCTTGATGACCGTATGCAGGACACTAGCCTGATTCGCCACTGGGGCAAGATGAAAGCGATCCG CCATAACGCTCAGTTGGTCCTCGACTTGGCAGAAGAGTACGGCAGTGTGGGGAACTGGCTGGCGGACTGGCCGGTGGACG ATATCGTGGGTATGTGGTGGTTGCTGAAAAAACGGGGCAAGCAACTGGGAGGTAATTCTGGGGCGGCTTTCTTGCGTATG GTAGGCCGCGATACGTGGTATCCCACCGCCGATGTAGTGGCTGCTCTAAAGGCACAAAATATCATCGACAAGCCGCCAGC AAGCCAGCGAGACCAAAAGGCTGCCCAGGCCGCCTTCAACACGTGGCAAAGGGAAAGCGGTTGGCCGCAGTCCCATATCA GCAAGGTGCTGGCCTTTACTGTGGGCTGA
Upstream 100 bases:
>100_bases CCGCAGGTCGACTCGAAGAGGACAGGGGAGTGATTCTACAATGCGTCCTTTTCACTGTATATCTGGCGCTTAGATGCAAT GGCGCAAACTGGAGTAGGGC
Downstream 100 bases:
>100_bases GCGGCGACGGAACCTCTGTTCCTTATTAAGGGTCCCGATTCCCTTGATGCAGGCGTGAACATAAATGATAATGACTCGTC TTTAATGTTATGAATTGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: DNA-3-Methyladenine Glycosylase; 3-Methyladenine DNA Glycosylase-Like Protein; 3-Methyl-Adenine DNA Glycosylase; DNA Glycosylase Protein; DNA-3-Methyladenine Glycosylase I; DNA-Glycosylase
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MTPFKDLLALAVNRKGSLKAVQAQLPTVADSDTLRHRDDAFYMSALTRRIFRAGLKHSLVDNKWPAFEKAFFGFDPQKLV LMPDTMLDDRMQDTSLIRHWGKMKAIRHNAQLVLDLAEEYGSVGNWLADWPVDDIVGMWWLLKKRGKQLGGNSGAAFLRM VGRDTWYPTADVVAALKAQNIIDKPPASQRDQKAAQAAFNTWQRESGWPQSHISKVLAFTVG
Sequences:
>Translated_222_residues MTPFKDLLALAVNRKGSLKAVQAQLPTVADSDTLRHRDDAFYMSALTRRIFRAGLKHSLVDNKWPAFEKAFFGFDPQKLV LMPDTMLDDRMQDTSLIRHWGKMKAIRHNAQLVLDLAEEYGSVGNWLADWPVDDIVGMWWLLKKRGKQLGGNSGAAFLRM VGRDTWYPTADVVAALKAQNIIDKPPASQRDQKAAQAAFNTWQRESGWPQSHISKVLAFTVG >Mature_221_residues TPFKDLLALAVNRKGSLKAVQAQLPTVADSDTLRHRDDAFYMSALTRRIFRAGLKHSLVDNKWPAFEKAFFGFDPQKLVL MPDTMLDDRMQDTSLIRHWGKMKAIRHNAQLVLDLAEEYGSVGNWLADWPVDDIVGMWWLLKKRGKQLGGNSGAAFLRMV GRDTWYPTADVVAALKAQNIIDKPPASQRDQKAAQAAFNTWQRESGWPQSHISKVLAFTVG
Specific function: Unknown
COG id: COG2818
COG function: function code L; 3-methyladenine DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25037; Mature: 24906
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPFKDLLALAVNRKGSLKAVQAQLPTVADSDTLRHRDDAFYMSALTRRIFRAGLKHSLV CCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DNKWPAFEKAFFGFDPQKLVLMPDTMLDDRMQDTSLIRHWGKMKAIRHNAQLVLDLAEEY CCCCCHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSVGNWLADWPVDDIVGMWWLLKKRGKQLGGNSGAAFLRMVGRDTWYPTADVVAALKAQN CCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH IIDKPPASQRDQKAAQAAFNTWQRESGWPQSHISKVLAFTVG HHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TPFKDLLALAVNRKGSLKAVQAQLPTVADSDTLRHRDDAFYMSALTRRIFRAGLKHSLV CCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DNKWPAFEKAFFGFDPQKLVLMPDTMLDDRMQDTSLIRHWGKMKAIRHNAQLVLDLAEEY CCCCCHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSVGNWLADWPVDDIVGMWWLLKKRGKQLGGNSGAAFLRMVGRDTWYPTADVVAALKAQN CCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHH IIDKPPASQRDQKAAQAAFNTWQRESGWPQSHISKVLAFTVG HHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA