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The map label for this gene is nlpD [C]

Identifier: 110834032

GI number: 110834032

Start: 1331892

End: 1332653

Strand: Direct

Name: nlpD [C]

Synonym: ABO_1171

Alternate gene names: 110834032

Gene position: 1331892-1332653 (Clockwise)

Preceding gene: 110834031

Following gene: 110834033

Centisome position: 42.69

GC content: 55.12

Gene sequence:

>762_bases
ATGCGTTCTCTGGCAGCGTTTGTGGTGTGGGTTCTGTTCAGTGGTTGTAGCGCGGGCAATTTTGCACCGGTGGTCGATAT
TTATGGCCAGGAGCCGAAGCCGCGTAAAGTGACCTCTGGTACCCACCATGTGCGTGAAGGGGAGACCCTATACTCCATTG
CTTGGCGTTATGGGTGGGACTTTCGTGCCCTAGCCCGCGCCAATAATATTCCTGCTCCTTACACCATTTATCCCGGCCAG
CGCATTTCCATGGCTCTCAAGGCACCCGATTCCGGCGTAGCCAGTAAGCCGAACACATCGTCGTCAAAGCCCGCTAGCAA
GCCCTCCGTGTCAAAGCCTACCTCCAAACCCACGCCGAAGCCTGCTCCAAGCTCGAAAACACCGGTGGGGCTAGTAGAGT
GGCGTTGGCCGGCCAGCGGCCAGGTGGTGGAATCATTTTCCTCTGCTAGCCAGGGCCGTAAGGGCATTGCTATTTCCGGG
CGCCTTAATAGCCCTGTGGTGGCGGCAGCATCGGGCCGAGTGGTTTACCGGGGCAGTGGGCTTACCGGTTATGGTAACTT
GCTGATTATCAAACACAGCGAACGCTGGTTAAGTGCCTATGCCCATAATGATAAAATGATGGTGAAAGAAGGGGATGCGG
TGAAAGCTGGGCAGCAGGTTGCCACTATGGGTGCCAGTGGCACCTTTCGCACCCAACTACATTTTGAAATACGTAAAGAT
GGTAAGCCTGTGGATCCCATGGGGTATTTGCCTAAGCGTTAA

Upstream 100 bases:

>100_bases
TCAGTATGGGTTACGGTGCAGTAGGCACTTCAAATTCAGTTTCCTGGTAACGGGGAGGGTTAATGGCAGTAACAATTCAC
ACAGGCACTGATAGGTACTG

Downstream 100 bases:

>100_bases
TTTTTTGTACCTACTAACGGAACACTTGCATGCCCCGCGATAACGCCCGTGAACACCGTTTATTGATATTGGCTGGTTTG
GCCTCCGTGTTCACCGCGCT

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MRSLAAFVVWVLFSGCSAGNFAPVVDIYGQEPKPRKVTSGTHHVREGETLYSIAWRYGWDFRALARANNIPAPYTIYPGQ
RISMALKAPDSGVASKPNTSSSKPASKPSVSKPTSKPTPKPAPSSKTPVGLVEWRWPASGQVVESFSSASQGRKGIAISG
RLNSPVVAAASGRVVYRGSGLTGYGNLLIIKHSERWLSAYAHNDKMMVKEGDAVKAGQQVATMGASGTFRTQLHFEIRKD
GKPVDPMGYLPKR

Sequences:

>Translated_253_residues
MRSLAAFVVWVLFSGCSAGNFAPVVDIYGQEPKPRKVTSGTHHVREGETLYSIAWRYGWDFRALARANNIPAPYTIYPGQ
RISMALKAPDSGVASKPNTSSSKPASKPSVSKPTSKPTPKPAPSSKTPVGLVEWRWPASGQVVESFSSASQGRKGIAISG
RLNSPVVAAASGRVVYRGSGLTGYGNLLIIKHSERWLSAYAHNDKMMVKEGDAVKAGQQVATMGASGTFRTQLHFEIRKD
GKPVDPMGYLPKR
>Mature_253_residues
MRSLAAFVVWVLFSGCSAGNFAPVVDIYGQEPKPRKVTSGTHHVREGETLYSIAWRYGWDFRALARANNIPAPYTIYPGQ
RISMALKAPDSGVASKPNTSSSKPASKPSVSKPTSKPTPKPAPSSKTPVGLVEWRWPASGQVVESFSSASQGRKGIAISG
RLNSPVVAAASGRVVYRGSGLTGYGNLLIIKHSERWLSAYAHNDKMMVKEGDAVKAGQQVATMGASGTFRTQLHFEIRKD
GKPVDPMGYLPKR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=271, Percent_Identity=40.2214022140221, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI87082174, Length=244, Percent_Identity=41.3934426229508, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27230; Mature: 27230

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLAAFVVWVLFSGCSAGNFAPVVDIYGQEPKPRKVTSGTHHVREGETLYSIAWRYGWD
CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
FRALARANNIPAPYTIYPGQRISMALKAPDSGVASKPNTSSSKPASKPSVSKPTSKPTPK
HHHHHHCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAPSSKTPVGLVEWRWPASGQVVESFSSASQGRKGIAISGRLNSPVVAAASGRVVYRGSG
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCEEEEECCC
LTGYGNLLIIKHSERWLSAYAHNDKMMVKEGDAVKAGQQVATMGASGTFRTQLHFEIRKD
CCCCCCEEEEEECHHHHHHHHCCCEEEEECCCCHHCCCEEEECCCCCEEEEEEEEEEECC
GKPVDPMGYLPKR
CCCCCCCCCCCCC
>Mature Secondary Structure
MRSLAAFVVWVLFSGCSAGNFAPVVDIYGQEPKPRKVTSGTHHVREGETLYSIAWRYGWD
CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
FRALARANNIPAPYTIYPGQRISMALKAPDSGVASKPNTSSSKPASKPSVSKPTSKPTPK
HHHHHHCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAPSSKTPVGLVEWRWPASGQVVESFSSASQGRKGIAISGRLNSPVVAAASGRVVYRGSG
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCEEEEECCC
LTGYGNLLIIKHSERWLSAYAHNDKMMVKEGDAVKAGQQVATMGASGTFRTQLHFEIRKD
CCCCCCEEEEEECHHHHHHHHCCCEEEEECCCCHHCCCEEEECCCCCEEEEEEEEEEECC
GKPVDPMGYLPKR
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]