| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is fieF [H]
Identifier: 110834033
GI number: 110834033
Start: 1332683
End: 1333597
Strand: Direct
Name: fieF [H]
Synonym: ABO_1172
Alternate gene names: 110834033
Gene position: 1332683-1333597 (Clockwise)
Preceding gene: 110834032
Following gene: 110834034
Centisome position: 42.71
GC content: 52.13
Gene sequence:
>915_bases ATGCCCCGCGATAACGCCCGTGAACACCGTTTATTGATATTGGCTGGTTTGGCCTCCGTGTTCACCGCGCTGATCCTGAT TGCGGCCAAGGCGATTGCCTGGTTGATGACTGGCTCGGTAAGTTTGCTGGCCTCGCTGGTAGATTCTGTGATGGATTCGC TCGCGTCATTGATTAACTTTTTTGCTATCCGCTATTCGCTGGTGCCAGCGGATGAGGAGCACCGGTTTGGGCATGGTAAA GCAGAAGCGTTGGCGGGCTTGGGCCAGGCGATTTTTATTGCTGCTTCTTCTGTGTTTTTGATCTATCAGTCTATATTGAA ACTGATGGAGCCAAAGCCTATTGAAGAAAACGCGGTGGGGGTGGCTGTGATGGTGTTTTCCATCGCCATGACCTTCGGGC TTTTGCTGATTCAGAAATACGTGGTTCGGCAAACCGGTTCTACCGCGATTGAGGCAGATTCTCTGCACTATCTGTCTGAC CTAGCTGTGAACGTGGGTATTATTCTGGTATTGGTTGTCAGTCAATTTGGCTATCTGTGGCTCGATGGGGTCGTCGGGTT GGTCATCGCCGTATTCATTTTATTTAGCGCCTGGCACATTGCCTCTGAATCGGTTCAGCTGTTGCTTGATCGAGAGATCC CTGGCGATGTGAGAGAGGTGATTAGCGCGATTGTGGCGGATCATCCTCAGGCGCTGGGCTTTCATGATTTGCGTACCCGG CAGTCCGGGCGCACTCAGTTTATTCAGCTGCATGTGGATATGGACCAGAATCTGACATTGCTGAAGTCCCATGATTTGGC CTCACGGATAGAAACGCGTATTCAGGACGCCTTTCCCATGGCCGATGTGATCATCCACCAGGATCCGGTGGCCGTTGGCT CTAAAGTAACGTTGGACGATCGCCCTCCGGCCTGA
Upstream 100 bases:
>100_bases CCCAACTACATTTTGAAATACGTAAAGATGGTAAGCCTGTGGATCCCATGGGGTATTTGCCTAAGCGTTAATTTTTTGTA CCTACTAACGGAACACTTGC
Downstream 100 bases:
>100_bases TGCCTTCCTCTCTACCCCTTGTCTCGCTTGGTTTGTGCTGTGCGGTCAAACCGGGCTGTGCAGGTAAACATATTGTATTC ATAAGGGCTTTTCAGTAGCG
Product: cation efflux family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MPRDNAREHRLLILAGLASVFTALILIAAKAIAWLMTGSVSLLASLVDSVMDSLASLINFFAIRYSLVPADEEHRFGHGK AEALAGLGQAIFIAASSVFLIYQSILKLMEPKPIEENAVGVAVMVFSIAMTFGLLLIQKYVVRQTGSTAIEADSLHYLSD LAVNVGIILVLVVSQFGYLWLDGVVGLVIAVFILFSAWHIASESVQLLLDREIPGDVREVISAIVADHPQALGFHDLRTR QSGRTQFIQLHVDMDQNLTLLKSHDLASRIETRIQDAFPMADVIIHQDPVAVGSKVTLDDRPPA
Sequences:
>Translated_304_residues MPRDNAREHRLLILAGLASVFTALILIAAKAIAWLMTGSVSLLASLVDSVMDSLASLINFFAIRYSLVPADEEHRFGHGK AEALAGLGQAIFIAASSVFLIYQSILKLMEPKPIEENAVGVAVMVFSIAMTFGLLLIQKYVVRQTGSTAIEADSLHYLSD LAVNVGIILVLVVSQFGYLWLDGVVGLVIAVFILFSAWHIASESVQLLLDREIPGDVREVISAIVADHPQALGFHDLRTR QSGRTQFIQLHVDMDQNLTLLKSHDLASRIETRIQDAFPMADVIIHQDPVAVGSKVTLDDRPPA >Mature_303_residues PRDNAREHRLLILAGLASVFTALILIAAKAIAWLMTGSVSLLASLVDSVMDSLASLINFFAIRYSLVPADEEHRFGHGKA EALAGLGQAIFIAASSVFLIYQSILKLMEPKPIEENAVGVAVMVFSIAMTFGLLLIQKYVVRQTGSTAIEADSLHYLSDL AVNVGIILVLVVSQFGYLWLDGVVGLVIAVFILFSAWHIASESVQLLLDREIPGDVREVISAIVADHPQALGFHDLRTRQ SGRTQFIQLHVDMDQNLTLLKSHDLASRIETRIQDAFPMADVIIHQDPVAVGSKVTLDDRPPA
Specific function: Cation-efflux transporter that may have a role in detoxification [H]
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. FieF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790349, Length=268, Percent_Identity=47.3880597014925, Blast_Score=245, Evalue=2e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 33129; Mature: 32998
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRDNAREHRLLILAGLASVFTALILIAAKAIAWLMTGSVSLLASLVDSVMDSLASLINF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAIRYSLVPADEEHRFGHGKAEALAGLGQAIFIAASSVFLIYQSILKLMEPKPIEENAVG HHHHHHCCCCCCHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH VAVMVFSIAMTFGLLLIQKYVVRQTGSTAIEADSLHYLSDLAVNVGIILVLVVSQFGYLW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDGVVGLVIAVFILFSAWHIASESVQLLLDREIPGDVREVISAIVADHPQALGFHDLRTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHC QSGRTQFIQLHVDMDQNLTLLKSHDLASRIETRIQDAFPMADVIIHQDPVAVGSKVTLDD CCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCEEECCC RPPA CCCC >Mature Secondary Structure PRDNAREHRLLILAGLASVFTALILIAAKAIAWLMTGSVSLLASLVDSVMDSLASLINF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAIRYSLVPADEEHRFGHGKAEALAGLGQAIFIAASSVFLIYQSILKLMEPKPIEENAVG HHHHHHCCCCCCHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH VAVMVFSIAMTFGLLLIQKYVVRQTGSTAIEADSLHYLSDLAVNVGIILVLVVSQFGYLW HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDGVVGLVIAVFILFSAWHIASESVQLLLDREIPGDVREVISAIVADHPQALGFHDLRTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHC QSGRTQFIQLHVDMDQNLTLLKSHDLASRIETRIQDAFPMADVIIHQDPVAVGSKVTLDD CCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCEEECCC RPPA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA