| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834031
Identifier: 110834031
GI number: 110834031
Start: 1330872
End: 1331783
Strand: Direct
Name: 110834031
Synonym: ABO_1170
Alternate gene names: NA
Gene position: 1330872-1331783 (Clockwise)
Preceding gene: 110834030
Following gene: 110834032
Centisome position: 42.65
GC content: 52.63
Gene sequence:
>912_bases ATGATTCGACCCGGTATTTTTTTTCGTGGCATGGCCATGGGAACGGCTGATGTGGTGCCCGGTGTTTCCGGTGGTACTCT GGCGTTGATTACCGGTATCTATGAAGAGCTGATCAATACTCTGGGGGGGATCACTCCCCGGTTGCTGGTCGTGTGGCGCC AGCAAGGTTTCGTTGCTGTCTGGCAGCAGGCTAATCTGACTTTTCTTTTTACCTTGCTGGCCGGTATTTTTACCAGTATC GCGGTGTTGGCACGGCTGATTACCTGGCTTTTGGAAACCCATCCAGTACCGATTTGGGCGTTTTTTAGCGGTTTGATCCT GGCCAGTATCCCGCTGGTTTTAAAACCCTTGCAGCAGCGCGGGGCAATACAGATTGGTGCCTTTTTTCTGGGCACAGTGG TAGCGGTGGCGATTGGTTTAGCGCCGGCATTGTCCGCGGCAGGTAGCGGAGCATTGGTTTTTTTCTTCAGCGGCATGCTG GCTATTTGCGCCATGATTCTGCCCGGCATTTCGGGCAGTTTTATTCTTCTTTTACTGGGCATGTATCAACCTGTGCTTGA AGCTGTGAAGCAGGCGCAGTTTTCATTACTGCTGGCATTTATGGCGGGTTGTGCGGTTGGCCTGTTGAGCTTTGTACATG TGCTCAAGTGGACGCTACAGCGTTTCCATGACACCGTCATGGCGCTATTAGCAGGCTTTATGGCCGGTTCGTTGTTGAAG CTGTGGCCGTGGCGAATCAGTGGCGAGCAGGGTATTTCCGATCAATGGCTGTGGCCAGCACAGTATGCCCAGGTTACGGG CCAGGGGGCGCAATTACCCCTATCGTTGATAATGTTGGTTGTGGCTGCAGTAGTGGTCTGGTTACTTTATCGGGCTGCTC CGGTACATAATGTTGCACAAGCTAAGGACTGA
Upstream 100 bases:
>100_bases TACAAGGCGCGTTGAAGCTCGTTGTTTGCTTCTTCAGCGGTCGAGAAAATTCATTCCCACCCCGCATTGATGTGTGCAGC GTGATGCATGAGGCGTAAAG
Downstream 100 bases:
>100_bases ATGCTGACTCAGTATGGGTTACGGTGCAGTAGGCACTTCAAATTCAGTTTCCTGGTAACGGGGAGGGTTAATGGCAGTAA CAATTCACACAGGCACTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MIRPGIFFRGMAMGTADVVPGVSGGTLALITGIYEELINTLGGITPRLLVVWRQQGFVAVWQQANLTFLFTLLAGIFTSI AVLARLITWLLETHPVPIWAFFSGLILASIPLVLKPLQQRGAIQIGAFFLGTVVAVAIGLAPALSAAGSGALVFFFSGML AICAMILPGISGSFILLLLGMYQPVLEAVKQAQFSLLLAFMAGCAVGLLSFVHVLKWTLQRFHDTVMALLAGFMAGSLLK LWPWRISGEQGISDQWLWPAQYAQVTGQGAQLPLSLIMLVVAAVVVWLLYRAAPVHNVAQAKD
Sequences:
>Translated_303_residues MIRPGIFFRGMAMGTADVVPGVSGGTLALITGIYEELINTLGGITPRLLVVWRQQGFVAVWQQANLTFLFTLLAGIFTSI AVLARLITWLLETHPVPIWAFFSGLILASIPLVLKPLQQRGAIQIGAFFLGTVVAVAIGLAPALSAAGSGALVFFFSGML AICAMILPGISGSFILLLLGMYQPVLEAVKQAQFSLLLAFMAGCAVGLLSFVHVLKWTLQRFHDTVMALLAGFMAGSLLK LWPWRISGEQGISDQWLWPAQYAQVTGQGAQLPLSLIMLVVAAVVVWLLYRAAPVHNVAQAKD >Mature_303_residues MIRPGIFFRGMAMGTADVVPGVSGGTLALITGIYEELINTLGGITPRLLVVWRQQGFVAVWQQANLTFLFTLLAGIFTSI AVLARLITWLLETHPVPIWAFFSGLILASIPLVLKPLQQRGAIQIGAFFLGTVVAVAIGLAPALSAAGSGALVFFFSGML AICAMILPGISGSFILLLLGMYQPVLEAVKQAQFSLLLAFMAGCAVGLLSFVHVLKWTLQRFHDTVMALLAGFMAGSLLK LWPWRISGEQGISDQWLWPAQYAQVTGQGAQLPLSLIMLVVAAVVVWLLYRAAPVHNVAQAKD
Specific function: Unknown
COG id: COG2035
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32501; Mature: 32501
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRPGIFFRGMAMGTADVVPGVSGGTLALITGIYEELINTLGGITPRLLVVWRQQGFVAV CCCCCHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEH WQQANLTFLFTLLAGIFTSIAVLARLITWLLETHPVPIWAFFSGLILASIPLVLKPLQQR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC GAIQIGAFFLGTVVAVAIGLAPALSAAGSGALVFFFSGMLAICAMILPGISGSFILLLLG CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH MYQPVLEAVKQAQFSLLLAFMAGCAVGLLSFVHVLKWTLQRFHDTVMALLAGFMAGSLLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LWPWRISGEQGISDQWLWPAQYAQVTGQGAQLPLSLIMLVVAAVVVWLLYRAAPVHNVAQ HCCCEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC AKD CCC >Mature Secondary Structure MIRPGIFFRGMAMGTADVVPGVSGGTLALITGIYEELINTLGGITPRLLVVWRQQGFVAV CCCCCHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEH WQQANLTFLFTLLAGIFTSIAVLARLITWLLETHPVPIWAFFSGLILASIPLVLKPLQQR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC GAIQIGAFFLGTVVAVAIGLAPALSAAGSGALVFFFSGMLAICAMILPGISGSFILLLLG CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH MYQPVLEAVKQAQFSLLLAFMAGCAVGLLSFVHVLKWTLQRFHDTVMALLAGFMAGSLLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LWPWRISGEQGISDQWLWPAQYAQVTGQGAQLPLSLIMLVVAAVVVWLLYRAAPVHNVAQ HCCCEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC AKD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA