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The map label for this gene is yhcK [H]

Identifier: 110833576

GI number: 110833576

Start: 803442

End: 804545

Strand: Direct

Name: yhcK [H]

Synonym: ABO_0715

Alternate gene names: 110833576

Gene position: 803442-804545 (Clockwise)

Preceding gene: 110833575

Following gene: 110833577

Centisome position: 25.75

GC content: 54.35

Gene sequence:

>1104_bases
ATGGATCAAACGTTAACGCTTCACCCTGTGGCTTTGCAGTCCCAACAGCTGCGCCGCGTGCGGTTTGCGATCCTAGCGGG
TGGCGGTGCCCATACTCTACTTTGTTGGATCGCTTTACAGCTGGATTTTTTCCGGGGTGGAGAGTTCCTTTTCTATTCTC
TTTTTGCCGGCATTTGGGCGGGTCATCTTCTCTTTATTCTATTCATGCTGATGGGGCTGAATCGCCGTTTGGCGGAGCCT
TCCATGATTATGCCGTTAATGGTGTGGTCGACCACCGGGTTGCTAATAACGGCGTTATTCGTGGATCAGGTACGCCTGTG
TGTCATGCTGCTTTTCTTCGCCATTGTTCAGCTTGGGGTGTTTCAGGCGTCGTTGCGGCAGTTCATGGCGCTGGCCAGTT
ATTGCGTGTTGGGCTACGCAATTGTGCTGGGGGTTATTTGTGTGTACTGGCCGGAAGCGATTGATGCCCGGGGCGAGTGG
ATTCAGTGGGGGTTGTTTAGTGTCATGGTGGTGGCGGCCATGTTGTTGGCGTCTGAAATTTCCACTATTCGGTTCCAATT
GGGCAGGCGTAATCAGCAGTTAGCAGAAATTGTCGAGCGCATTCACGAGATGGCAGTGAAAGATGAATTGACCGGTTTCT
ATCGTCGCCGCCATGCCATGGAGCTATTAAATAATGCGTGCGGACAGTCTGCCCGCGGGGCGTACCAGTTGGCGGTGGTA
TACCTGGATTTGGATCACTTCAAGAGAACCAATGACCAGTATGGCCACCGTATGGGCGATGCGGTCTTGCAGCGTTTTGC
GGATGTGGCCCGTCGCCACCTGACCAAGCAGGATTTGGCCGCCCGGCTGGGGGGGGAGGAATTCATGTTGGTGCTACCAG
TGACTGACCAGGAGGAGGCACGTAACTTAGTGGAAGGTATTCTGATGAGCATGCGCAGCCAGCGTTTTAAGGATGCACCG
GGGCTGATGGTGACGGTGTCCGGGGGGCTGGCCATGCGGGCGGATGGTGAAACTCCTGCACAATTGATTAAACGAGCCGA
TCTCGCCTTGTATCGGGCCAAGGAAACCGGACGCGATAAACTGATTATCGGGGAGACCGAATGA

Upstream 100 bases:

>100_bases
GTCGACATTCAGTATTATTATTAGCACATCAATAATAATATTATGCTACCAGTTGGTGCGATTGCTAATGGGGAGGGTTG
CACCAACTCAGGAATCCGGC

Downstream 100 bases:

>100_bases
AGCATGATTTGCATCAGGCGGAAAAGCTGAGACTGAGCGAGAAACGCTTGATGCAAAGGCATAGTCGTTCTGCCATGGTA
ATCATCGCTATGCACACCCT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MDQTLTLHPVALQSQQLRRVRFAILAGGGAHTLLCWIALQLDFFRGGEFLFYSLFAGIWAGHLLFILFMLMGLNRRLAEP
SMIMPLMVWSTTGLLITALFVDQVRLCVMLLFFAIVQLGVFQASLRQFMALASYCVLGYAIVLGVICVYWPEAIDARGEW
IQWGLFSVMVVAAMLLASEISTIRFQLGRRNQQLAEIVERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAYQLAVV
YLDLDHFKRTNDQYGHRMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLVLPVTDQEEARNLVEGILMSMRSQRFKDAP
GLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDKLIIGETE

Sequences:

>Translated_367_residues
MDQTLTLHPVALQSQQLRRVRFAILAGGGAHTLLCWIALQLDFFRGGEFLFYSLFAGIWAGHLLFILFMLMGLNRRLAEP
SMIMPLMVWSTTGLLITALFVDQVRLCVMLLFFAIVQLGVFQASLRQFMALASYCVLGYAIVLGVICVYWPEAIDARGEW
IQWGLFSVMVVAAMLLASEISTIRFQLGRRNQQLAEIVERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAYQLAVV
YLDLDHFKRTNDQYGHRMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLVLPVTDQEEARNLVEGILMSMRSQRFKDAP
GLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDKLIIGETE
>Mature_367_residues
MDQTLTLHPVALQSQQLRRVRFAILAGGGAHTLLCWIALQLDFFRGGEFLFYSLFAGIWAGHLLFILFMLMGLNRRLAEP
SMIMPLMVWSTTGLLITALFVDQVRLCVMLLFFAIVQLGVFQASLRQFMALASYCVLGYAIVLGVICVYWPEAIDARGEW
IQWGLFSVMVVAAMLLASEISTIRFQLGRRNQQLAEIVERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAYQLAVV
YLDLDHFKRTNDQYGHRMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLVLPVTDQEEARNLVEGILMSMRSQRFKDAP
GLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDKLIIGETE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=33.5329341317365, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=30.7692307692308, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=36.5853658536585, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=32.5301204819277, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=31.7365269461078, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=31.1764705882353, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=35.2201257861635, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693134, Length=209, Percent_Identity=29.1866028708134, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788381, Length=142, Percent_Identity=33.8028169014084, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=164, Percent_Identity=25.609756097561, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 41368; Mature: 41368

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQTLTLHPVALQSQQLRRVRFAILAGGGAHTLLCWIALQLDFFRGGEFLFYSLFAGIWA
CCCCEEECHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GHLLFILFMLMGLNRRLAEPSMIMPLMVWSTTGLLITALFVDQVRLCVMLLFFAIVQLGV
HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQASLRQFMALASYCVLGYAIVLGVICVYWPEAIDARGEWIQWGLFSVMVVAAMLLASEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
STIRFQLGRRNQQLAEIVERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAYQLAVV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
YLDLDHFKRTNDQYGHRMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLVLPVTDQEEA
EEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCHHHH
RNLVEGILMSMRSQRFKDAPGLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDK
HHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
LIIGETE
EEECCCC
>Mature Secondary Structure
MDQTLTLHPVALQSQQLRRVRFAILAGGGAHTLLCWIALQLDFFRGGEFLFYSLFAGIWA
CCCCEEECHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GHLLFILFMLMGLNRRLAEPSMIMPLMVWSTTGLLITALFVDQVRLCVMLLFFAIVQLGV
HHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQASLRQFMALASYCVLGYAIVLGVICVYWPEAIDARGEWIQWGLFSVMVVAAMLLASEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
STIRFQLGRRNQQLAEIVERIHEMAVKDELTGFYRRRHAMELLNNACGQSARGAYQLAVV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
YLDLDHFKRTNDQYGHRMGDAVLQRFADVARRHLTKQDLAARLGGEEFMLVLPVTDQEEA
EEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCHHHH
RNLVEGILMSMRSQRFKDAPGLMVTVSGGLAMRADGETPAQLIKRADLALYRAKETGRDK
HHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
LIIGETE
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]