| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110680938
Identifier: 110680938
GI number: 110680938
Start: 3670244
End: 3671041
Strand: Direct
Name: 110680938
Synonym: RD1_3791
Alternate gene names: NA
Gene position: 3670244-3671041 (Clockwise)
Preceding gene: 110680937
Following gene: 110680939
Centisome position: 88.8
GC content: 59.02
Gene sequence:
>798_bases GTGAGCACATGGGAAGTACACGCCATCAAATATGCGGATCGAAACAGCCGCACACGGCGCGACAGTTTTATCTTTGATGA CAACCACGACGCGCCCCATCCCATGGATTATTTCATATGGCTGCTGCGTCGAGGCAACGAAGTGATCCTCGTGGACACAG GATATGACCAGACAGAAGCGCAAAATCGCGATCGTCCGATCCGGATGGACCCTGCCGACGCCTTGCGCCCCCTTGGGATA CTGCCAGAGCAGATCGACCACGTGATCGTCACCCATCTGCACTACGATCACGCGGGCGGCCTGCACCTGTTCCCGAATGC GAAACTGCATATGCAGGCGGCAGACATGGCCTATGCCACCGGCCCCTGCATGTGTCATGACACCCTGCGCATGCCCTTCA CGGCGGATCATATCTGCGAAGCGGTCAAGCGCCTTTATGCGGGCAAGGTAGTCTTTTACGAAGGCGACGCAGAAGTAGCG GATGGCGTGAGCGTCCATTGCATCGGCGGGCACAGCCGTGGCCTGCAGGCGGTCCGCGTCCGGACGCAAGCGGGCTGGCT CGTGCTGGCATCGGACGCCGCGCATTATTACGAGAACGTTTTTGCCCGCAAACCCTTCCCGATTGTGGTTGATCTACAAA ACATGCTGGATGGCTTTGCAACCCTTGAAAGACTGGCCTCCAAGCCGGATCTGATCATACCGGGTCACGACCCGCTGGTG GCCGCAGTTTTCCCGCAAGGTGCTGCGCCGCACATCCGGCGTCTTGATCAAGGCCCAATGTCCCCCATCCCACGATAG
Upstream 100 bases:
>100_bases TTGACGCACATCTTGGGGCGACGCATTTTCAGGCCTTCGATGCCGCAACCGCCGACATGATTGCAGCCACGGACATCAAG ACCTACCGGAGTGTCGTTCA
Downstream 100 bases:
>100_bases CTGAAAACGCACAATAAACAGGCACAGCGATTTAAATTGCGGCTGAACTGTTCCCTCATTCTGGCCAATCCATTTGGCCT CATGTGAAGCTGAGGCACGT
Product: metallo-beta-lactamase family protein, putative
Products: NA
Alternate protein names: Beta-Lactamase-Like; Zn-Dependent Hydrolase; Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Superfamily; Twin-Arginine Translocation Pathway Signal; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Family Protein; Hydrolase; Metallo-Beta-Lactamase; Organophosphate Pesticide Hydrolase; Beta-Lactamase; Metallo-Beta-Lactamase Superfamily Protein; Metallo-Beta-Lactamase Family Methyl Parathion Hydrolase; Zn-Dependent Hydrolases Including Glyoxylases; Beta-Lactamase Class B
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSTWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEAQNRDRPIRMDPADALRPLGI LPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYATGPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVA DGVSVHCIGGHSRGLQAVRVRTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV AAVFPQGAAPHIRRLDQGPMSPIPR
Sequences:
>Translated_265_residues MSTWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEAQNRDRPIRMDPADALRPLGI LPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYATGPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVA DGVSVHCIGGHSRGLQAVRVRTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV AAVFPQGAAPHIRRLDQGPMSPIPR >Mature_264_residues STWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEAQNRDRPIRMDPADALRPLGIL PEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYATGPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVAD GVSVHCIGGHSRGLQAVRVRTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLVA AVFPQGAAPHIRRLDQGPMSPIPR
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29728; Mature: 29597
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00196 COPPER_BLUE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEA CCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHH QNRDRPIRMDPADALRPLGILPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYAT CCCCCCEEECHHHHHCCCCCCHHHHHHEEEEEEEECCCCCEEECCCCEEEEEECCCEECC GPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVADGVSVHCIGGHSRGLQAVRV CCEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHCCCEEEEECCCCCCEEEEEE RTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV EECCCEEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCEE AAVFPQGAAPHIRRLDQGPMSPIPR EEECCCCCCHHHHHCCCCCCCCCCC >Mature Secondary Structure STWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEA CCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHH QNRDRPIRMDPADALRPLGILPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYAT CCCCCCEEECHHHHHCCCCCCHHHHHHEEEEEEEECCCCCEEECCCCEEEEEECCCEECC GPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVADGVSVHCIGGHSRGLQAVRV CCEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHCCCEEEEECCCCCCEEEEEE RTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV EECCCEEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCEE AAVFPQGAAPHIRRLDQGPMSPIPR EEECCCCCCHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA