Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110680938

Identifier: 110680938

GI number: 110680938

Start: 3670244

End: 3671041

Strand: Direct

Name: 110680938

Synonym: RD1_3791

Alternate gene names: NA

Gene position: 3670244-3671041 (Clockwise)

Preceding gene: 110680937

Following gene: 110680939

Centisome position: 88.8

GC content: 59.02

Gene sequence:

>798_bases
GTGAGCACATGGGAAGTACACGCCATCAAATATGCGGATCGAAACAGCCGCACACGGCGCGACAGTTTTATCTTTGATGA
CAACCACGACGCGCCCCATCCCATGGATTATTTCATATGGCTGCTGCGTCGAGGCAACGAAGTGATCCTCGTGGACACAG
GATATGACCAGACAGAAGCGCAAAATCGCGATCGTCCGATCCGGATGGACCCTGCCGACGCCTTGCGCCCCCTTGGGATA
CTGCCAGAGCAGATCGACCACGTGATCGTCACCCATCTGCACTACGATCACGCGGGCGGCCTGCACCTGTTCCCGAATGC
GAAACTGCATATGCAGGCGGCAGACATGGCCTATGCCACCGGCCCCTGCATGTGTCATGACACCCTGCGCATGCCCTTCA
CGGCGGATCATATCTGCGAAGCGGTCAAGCGCCTTTATGCGGGCAAGGTAGTCTTTTACGAAGGCGACGCAGAAGTAGCG
GATGGCGTGAGCGTCCATTGCATCGGCGGGCACAGCCGTGGCCTGCAGGCGGTCCGCGTCCGGACGCAAGCGGGCTGGCT
CGTGCTGGCATCGGACGCCGCGCATTATTACGAGAACGTTTTTGCCCGCAAACCCTTCCCGATTGTGGTTGATCTACAAA
ACATGCTGGATGGCTTTGCAACCCTTGAAAGACTGGCCTCCAAGCCGGATCTGATCATACCGGGTCACGACCCGCTGGTG
GCCGCAGTTTTCCCGCAAGGTGCTGCGCCGCACATCCGGCGTCTTGATCAAGGCCCAATGTCCCCCATCCCACGATAG

Upstream 100 bases:

>100_bases
TTGACGCACATCTTGGGGCGACGCATTTTCAGGCCTTCGATGCCGCAACCGCCGACATGATTGCAGCCACGGACATCAAG
ACCTACCGGAGTGTCGTTCA

Downstream 100 bases:

>100_bases
CTGAAAACGCACAATAAACAGGCACAGCGATTTAAATTGCGGCTGAACTGTTCCCTCATTCTGGCCAATCCATTTGGCCT
CATGTGAAGCTGAGGCACGT

Product: metallo-beta-lactamase family protein, putative

Products: NA

Alternate protein names: Beta-Lactamase-Like; Zn-Dependent Hydrolase; Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Superfamily; Twin-Arginine Translocation Pathway Signal; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Family Protein; Hydrolase; Metallo-Beta-Lactamase; Organophosphate Pesticide Hydrolase; Beta-Lactamase; Metallo-Beta-Lactamase Superfamily Protein; Metallo-Beta-Lactamase Family Methyl Parathion Hydrolase; Zn-Dependent Hydrolases Including Glyoxylases; Beta-Lactamase Class B

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSTWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEAQNRDRPIRMDPADALRPLGI
LPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYATGPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVA
DGVSVHCIGGHSRGLQAVRVRTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV
AAVFPQGAAPHIRRLDQGPMSPIPR

Sequences:

>Translated_265_residues
MSTWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEAQNRDRPIRMDPADALRPLGI
LPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYATGPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVA
DGVSVHCIGGHSRGLQAVRVRTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV
AAVFPQGAAPHIRRLDQGPMSPIPR
>Mature_264_residues
STWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEAQNRDRPIRMDPADALRPLGIL
PEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYATGPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVAD
GVSVHCIGGHSRGLQAVRVRTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLVA
AVFPQGAAPHIRRLDQGPMSPIPR

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29728; Mature: 29597

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00196 COPPER_BLUE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEA
CCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHH
QNRDRPIRMDPADALRPLGILPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYAT
CCCCCCEEECHHHHHCCCCCCHHHHHHEEEEEEEECCCCCEEECCCCEEEEEECCCEECC
GPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVADGVSVHCIGGHSRGLQAVRV
CCEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHCCCEEEEECCCCCCEEEEEE
RTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV
EECCCEEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCEE
AAVFPQGAAPHIRRLDQGPMSPIPR
EEECCCCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STWEVHAIKYADRNSRTRRDSFIFDDNHDAPHPMDYFIWLLRRGNEVILVDTGYDQTEA
CCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHH
QNRDRPIRMDPADALRPLGILPEQIDHVIVTHLHYDHAGGLHLFPNAKLHMQAADMAYAT
CCCCCCEEECHHHHHCCCCCCHHHHHHEEEEEEEECCCCCEEECCCCEEEEEECCCEECC
GPCMCHDTLRMPFTADHICEAVKRLYAGKVVFYEGDAEVADGVSVHCIGGHSRGLQAVRV
CCEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCHHCCCEEEEECCCCCCEEEEEE
RTQAGWLVLASDAAHYYENVFARKPFPIVVDLQNMLDGFATLERLASKPDLIIPGHDPLV
EECCCEEEEECCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCEEECCCCCEE
AAVFPQGAAPHIRRLDQGPMSPIPR
EEECCCCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA