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The map label for this gene is ureD

Identifier: 110680939

GI number: 110680939

Start: 3671168

End: 3671989

Strand: Direct

Name: ureD

Synonym: RD1_3792

Alternate gene names: 110680939

Gene position: 3671168-3671989 (Clockwise)

Preceding gene: 110680938

Following gene: 110680940

Centisome position: 88.82

GC content: 61.31

Gene sequence:

>822_bases
TTGCTCATGCGCACTGCCACACCGCTGGACCAACCCCGCGCCATCGGCTCTGCCCGTGTCAGCAGCAAACGGGTCAATGG
TGGCTCTGGCATCGACGGGTTGCGCCAGTCGGGTGCGCTGAAGCTCTTGTTCCCAACATCCCGTGACATCGTTCAGGCGA
CCCTGATCAACACAGCAGGCGGTGTCACGGGGGGCGACCGGTTTGACATTGACGGCTGTGCCGGTGCGGGGTCCCGGCTG
ACCATAACCACGCAAGCAGCCGAACGCGCATATGGCGCACAAATTGGCCAAACCGGCGAGATCAAAACAAATCTCAAAGC
CGAGGCAGGCAGCCGCCTTTTCTGGCTGCCACAGGAAACGATCCTTTACAAGGATGCCGCAATTGACCGCCAACTCGGCG
TGGACCTCAGCACGGGAGCCGAGTTCCTGATGGTTGAACCGGTCCTCTTTGGGCGCCGGGCCATGGGCGAAGATGTCAGC
ACCCTCGCTTTTCGGGATCGCATTGATATCCGTCGTGACGGCGCGCCGATTTACCTCGACGCCATTCACTTACAGGGCGA
TGTGGCCACGCATCTCGACAGACCCGCGATTGCAGATGGCGCACGTGCGATGGCGAGCCTTGTATGGGTATCGGCTGAGG
CCGAAGGCCGCATCGACGCGCTGCGCCGCATTATTGGCCGCTCTGGCGGTGTCAGCATGCTGCACCCGGACGTGCTGGTG
ATGCGTCTTTTGGCGGCTGATGGCTATATCCTGCGGCGCTCCTTGATACCCGTGCTGGACCTGATCACGGATGACACACT
TCCCCAAAGCTGGAGGCTATAG

Upstream 100 bases:

>100_bases
GCGATTTAAATTGCGGCTGAACTGTTCCCTCATTCTGGCCAATCCATTTGGCCTCATGTGAAGCTGAGGCACGTTTGAAA
CGACCTGAAGGCCCGCTTCC

Downstream 100 bases:

>100_bases
GCGATGCAACTCACCCCACGGGAAAAAGACAAACTGCTCATTTCGATGGCCGCCGAAGTTGCCCGCAAAAGGCTCGCGCG
CGGGGTCAAGCTGAACCACC

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLMRTATPLDQPRAIGSARVSSKRVNGGSGIDGLRQSGALKLLFPTSRDIVQATLINTAGGVTGGDRFDIDGCAGAGSRL
TITTQAAERAYGAQIGQTGEIKTNLKAEAGSRLFWLPQETILYKDAAIDRQLGVDLSTGAEFLMVEPVLFGRRAMGEDVS
TLAFRDRIDIRRDGAPIYLDAIHLQGDVATHLDRPAIADGARAMASLVWVSAEAEGRIDALRRIIGRSGGVSMLHPDVLV
MRLLAADGYILRRSLIPVLDLITDDTLPQSWRL

Sequences:

>Translated_273_residues
MLMRTATPLDQPRAIGSARVSSKRVNGGSGIDGLRQSGALKLLFPTSRDIVQATLINTAGGVTGGDRFDIDGCAGAGSRL
TITTQAAERAYGAQIGQTGEIKTNLKAEAGSRLFWLPQETILYKDAAIDRQLGVDLSTGAEFLMVEPVLFGRRAMGEDVS
TLAFRDRIDIRRDGAPIYLDAIHLQGDVATHLDRPAIADGARAMASLVWVSAEAEGRIDALRRIIGRSGGVSMLHPDVLV
MRLLAADGYILRRSLIPVLDLITDDTLPQSWRL
>Mature_273_residues
MLMRTATPLDQPRAIGSARVSSKRVNGGSGIDGLRQSGALKLLFPTSRDIVQATLINTAGGVTGGDRFDIDGCAGAGSRL
TITTQAAERAYGAQIGQTGEIKTNLKAEAGSRLFWLPQETILYKDAAIDRQLGVDLSTGAEFLMVEPVLFGRRAMGEDVS
TLAFRDRIDIRRDGAPIYLDAIHLQGDVATHLDRPAIADGARAMASLVWVSAEAEGRIDALRRIIGRSGGVSMLHPDVLV
MRLLAADGYILRRSLIPVLDLITDDTLPQSWRL

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_ROSDO (Q161T3)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_683946.1
- STRING:   Q161T3
- GeneID:   4198841
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_3792
- NMPDR:   fig|375451.6.peg.3526
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   QETILFD
- ProtClustDB:   CLSK767306
- BioCyc:   RDEN375451:RD1_3792-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 29333; Mature: 29333

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMRTATPLDQPRAIGSARVSSKRVNGGSGIDGLRQSGALKLLFPTSRDIVQATLINTAG
CCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCC
GVTGGDRFDIDGCAGAGSRLTITTQAAERAYGAQIGQTGEIKTNLKAEAGSRLFWLPQET
CCCCCCEECCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCHH
ILYKDAAIDRQLGVDLSTGAEFLMVEPVLFGRRAMGEDVSTLAFRDRIDIRRDGAPIYLD
EEEEHHHHHHHHCCCCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHCCCEECCCCCEEEE
AIHLQGDVATHLDRPAIADGARAMASLVWVSAEAEGRIDALRRIIGRSGGVSMLHPDVLV
EEEECCCHHHHCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCEECHHHHH
MRLLAADGYILRRSLIPVLDLITDDTLPQSWRL
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLMRTATPLDQPRAIGSARVSSKRVNGGSGIDGLRQSGALKLLFPTSRDIVQATLINTAG
CCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCHHHHCCCEEEEECCCHHHHHHHHHHCCC
GVTGGDRFDIDGCAGAGSRLTITTQAAERAYGAQIGQTGEIKTNLKAEAGSRLFWLPQET
CCCCCCEECCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCHH
ILYKDAAIDRQLGVDLSTGAEFLMVEPVLFGRRAMGEDVSTLAFRDRIDIRRDGAPIYLD
EEEEHHHHHHHHCCCCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHCCCEECCCCCEEEE
AIHLQGDVATHLDRPAIADGARAMASLVWVSAEAEGRIDALRRIIGRSGGVSMLHPDVLV
EEEECCCHHHHCCCCCHHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCCEECHHHHH
MRLLAADGYILRRSLIPVLDLITDDTLPQSWRL
HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA