Click here to switch to the map view.

The map label for this gene is 110680473

Identifier: 110680473

GI number: 110680473

Start: 3153832

End: 3154356

Strand: Direct

Name: 110680473

Synonym: RD1_3293

Alternate gene names: NA

Gene position: 3153832-3154356 (Clockwise)

Preceding gene: 110680443

Following gene: 110680480

Centisome position: 76.31

GC content: 60.0

Gene sequence:

>525_bases
ATGCATCGCGCACGCCAAGACAAGGAAAACACCATGAACAGACGTTCTACCCTCAAAGCGGCCCTTGCCGTCACTGCCCT
GACCACCATTTCTGCCTGCGCGACACTGACAGGGGGCGATGACATCGTCGATGTTGCGGCATCCAACGGCAACTTCAACA
CGCTGGTTGCTGCGGTTCAGGCGGCTGGGCTTGAGGACACGTTGCGCAGCGAAGGTCCGTTCACTGTGTTCGCACCCACC
GATGACGCCTTTGCCGCCCTGCCCGCTGGGACCATTGAGGACCTGCTGCTGCCGGAAAACAAGGACAAACTGGTCGGAAT
TCTGACCTATCACGTGATCCCCGGCGCTGTGATGGCTGCCGACGTGAGTGGCGCAAGCACGGACGTGGCAACCGTTAACG
GCGCAATGTTGACCGTCGACGGAACCGGCGATGGTGTTGTCGTCGGCGGCGCAAATGTGACCGCGGCGGACATCAAAGCG
TCAAACGGTGTGATCCATGTGATCGACAAAGTGCTGCTGCCCTGA

Upstream 100 bases:

>100_bases
TATCCGCCGTTCGATTTGAAATCACAAACGAGTGATCCAACTATTTGTATAGGCCGGTGCGGCACACCGCGCGCACGGCC
CGGAAACACATCAGTGCCGC

Downstream 100 bases:

>100_bases
TCGAGGCATCGAGACAGACCGCAGGTTTACCCCTGCGGTCTTGATCTTGTTTTCAAACAGCGTGTGGGTCTGTCACTGGA
CCCAAGCCGCTTTGCGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MHRARQDKENTMNRRSTLKAALAVTALTTISACATLTGGDDIVDVAASNGNFNTLVAAVQAAGLEDTLRSEGPFTVFAPT
DDAFAALPAGTIEDLLLPENKDKLVGILTYHVIPGAVMAADVSGASTDVATVNGAMLTVDGTGDGVVVGGANVTAADIKA
SNGVIHVIDKVLLP

Sequences:

>Translated_174_residues
MHRARQDKENTMNRRSTLKAALAVTALTTISACATLTGGDDIVDVAASNGNFNTLVAAVQAAGLEDTLRSEGPFTVFAPT
DDAFAALPAGTIEDLLLPENKDKLVGILTYHVIPGAVMAADVSGASTDVATVNGAMLTVDGTGDGVVVGGANVTAADIKA
SNGVIHVIDKVLLP
>Mature_174_residues
MHRARQDKENTMNRRSTLKAALAVTALTTISACATLTGGDDIVDVAASNGNFNTLVAAVQAAGLEDTLRSEGPFTVFAPT
DDAFAALPAGTIEDLLLPENKDKLVGILTYHVIPGAVMAADVSGASTDVATVNGAMLTVDGTGDGVVVGGANVTAADIKA
SNGVIHVIDKVLLP

Specific function: Unknown

COG id: COG2335

COG function: function code M; Secreted and surface protein containing fasciclin-like repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAS1 domain [H]

Homologues:

Organism=Homo sapiens, GI4507467, Length=133, Percent_Identity=40.6015037593985, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI209863034, Length=124, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI209863011, Length=124, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI209862911, Length=124, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI209862907, Length=124, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28574452, Length=137, Percent_Identity=31.3868613138686, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000782 [H]

Pfam domain/function: PF02469 Fasciclin [H]

EC number: NA

Molecular weight: Translated: 17628; Mature: 17628

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50213 FAS1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRARQDKENTMNRRSTLKAALAVTALTTISACATLTGGDDIVDVAASNGNFNTLVAAVQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
AAGLEDTLRSEGPFTVFAPTDDAFAALPAGTIEDLLLPENKDKLVGILTYHVIPGAVMAA
HCCCHHHHHCCCCEEEECCCCCCCEECCCCCHHHHCCCCCCCCEEEEEEEECCCCEEEEE
DVSGASTDVATVNGAMLTVDGTGDGVVVGGANVTAADIKASNGVIHVIDKVLLP
ECCCCCCCEEEECCEEEEEECCCCEEEEECCCEEEEEEECCCCCCEEHHHHHCC
>Mature Secondary Structure
MHRARQDKENTMNRRSTLKAALAVTALTTISACATLTGGDDIVDVAASNGNFNTLVAAVQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHH
AAGLEDTLRSEGPFTVFAPTDDAFAALPAGTIEDLLLPENKDKLVGILTYHVIPGAVMAA
HCCCHHHHHCCCCEEEECCCCCCCEECCCCCHHHHCCCCCCCCEEEEEEEECCCCEEEEE
DVSGASTDVATVNGAMLTVDGTGDGVVVGGANVTAADIKASNGVIHVIDKVLLP
ECCCCCCCEEEECCEEEEEECCCCEEEEECCCEEEEEEECCCCCCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]