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The map label for this gene is ompW [H]

Identifier: 110680480

GI number: 110680480

Start: 3160893

End: 3161498

Strand: Direct

Name: ompW [H]

Synonym: RD1_3300

Alternate gene names: 110680480

Gene position: 3160893-3161498 (Clockwise)

Preceding gene: 110680473

Following gene: 110680484

Centisome position: 76.48

GC content: 57.1

Gene sequence:

>606_bases
ATGAAACACACTCTCAAAGCCATCCTTCTTTCCAGCGCGCTTGCCATAGTGGCAGGACCAGTCGTTGCGCAATCGCAAGG
GGACTGGACCGTCGCGTTCGGCTTTGGCAACGTCAACCCGAAATCCGGCAACGGCACCCTCGCTGGCGGCGAGGCCGACA
TTGATGATGACACCCGTCCCATCTTTACCGTCGAGTATTTCATCGCAAACAACATCGGGCTTGAGTTGCTTGTCGCAACA
CCGTTCGAACACGACATCTCCATTGACGGTATTGGTGGCGCGGGCAGCACCAAACACCTGCCGCCCACATTGTCGCTCAA
CTATCACTTCCCCACCAACAGCGCATGGAAACCCTATGTGGGTGCGGGTCTGAACTACACGTTCTTTTTCGAAGAGGATT
CCGGGCTGGGCGATCTTGAGCTTGATAATTCCTTCGGCTTGTCCCTGCAGGCCGGTCTCGACTACATGATCAGCGACACC
GGTGCCGTGCGGCTGAACGTGCGCTGGTTTGACATCGACGCCGATGCCGAACTCAACGGCAGCAAAATCGGCACCGCCGA
GATTGACCCCGTGCTGATCGGTGTCTCCTACGTGCACAGGTTCTGA

Upstream 100 bases:

>100_bases
CAAAATCAGCCGGCGGCATATCGGTTTGACCCATGTCAATGAAGGGGCTGTTCGCTGATGCCATAGGGTCCACGCTAAAC
TCTGAAAGGCACTTGGAATC

Downstream 100 bases:

>100_bases
ACATCGCTGCGCGAGGGGGCGGCCTGACCCGGATACCATCATAGGGTCAGGCCATCGCCGCCATCAGTTCGCGCCCCACC
AGCATCCGGCGGATTTCAGA

Product: outer membrane protein W, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKHTLKAILLSSALAIVAGPVVAQSQGDWTVAFGFGNVNPKSGNGTLAGGEADIDDDTRPIFTVEYFIANNIGLELLVAT
PFEHDISIDGIGGAGSTKHLPPTLSLNYHFPTNSAWKPYVGAGLNYTFFFEEDSGLGDLELDNSFGLSLQAGLDYMISDT
GAVRLNVRWFDIDADAELNGSKIGTAEIDPVLIGVSYVHRF

Sequences:

>Translated_201_residues
MKHTLKAILLSSALAIVAGPVVAQSQGDWTVAFGFGNVNPKSGNGTLAGGEADIDDDTRPIFTVEYFIANNIGLELLVAT
PFEHDISIDGIGGAGSTKHLPPTLSLNYHFPTNSAWKPYVGAGLNYTFFFEEDSGLGDLELDNSFGLSLQAGLDYMISDT
GAVRLNVRWFDIDADAELNGSKIGTAEIDPVLIGVSYVHRF
>Mature_201_residues
MKHTLKAILLSSALAIVAGPVVAQSQGDWTVAFGFGNVNPKSGNGTLAGGEADIDDDTRPIFTVEYFIANNIGLELLVAT
PFEHDISIDGIGGAGSTKHLPPTLSLNYHFPTNSAWKPYVGAGLNYTFFFEEDSGLGDLELDNSFGLSLQAGLDYMISDT
GAVRLNVRWFDIDADAELNGSKIGTAEIDPVLIGVSYVHRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=213, Percent_Identity=34.2723004694836, Blast_Score=113, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 21454; Mature: 21454

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHTLKAILLSSALAIVAGPVVAQSQGDWTVAFGFGNVNPKSGNGTLAGGEADIDDDTRP
CCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCC
IFTVEYFIANNIGLELLVATPFEHDISIDGIGGAGSTKHLPPTLSLNYHFPTNSAWKPYV
EEEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
GAGLNYTFFFEEDSGLGDLELDNSFGLSLQAGLDYMISDTGAVRLNVRWFDIDADAELNG
CCCCCEEEEEECCCCCCCEEECCCCCEEEECCCEEEEECCCEEEEEEEEEEECCCCCCCC
SKIGTAEIDPVLIGVSYVHRF
CEECCCCCCEEEEEEEHHHCC
>Mature Secondary Structure
MKHTLKAILLSSALAIVAGPVVAQSQGDWTVAFGFGNVNPKSGNGTLAGGEADIDDDTRP
CCHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCC
IFTVEYFIANNIGLELLVATPFEHDISIDGIGGAGSTKHLPPTLSLNYHFPTNSAWKPYV
EEEEEEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
GAGLNYTFFFEEDSGLGDLELDNSFGLSLQAGLDYMISDTGAVRLNVRWFDIDADAELNG
CCCCCEEEEEECCCCCCCEEECCCCCEEEECCCEEEEECCCEEEEEEEEEEECCCCCCCC
SKIGTAEIDPVLIGVSYVHRF
CEECCCCCCEEEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]