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The map label for this gene is yfjD [H]

Identifier: 110680281

GI number: 110680281

Start: 2965734

End: 2967041

Strand: Direct

Name: yfjD [H]

Synonym: RD1_3092

Alternate gene names: 110680281

Gene position: 2965734-2967041 (Clockwise)

Preceding gene: 110680280

Following gene: 110680291

Centisome position: 71.76

GC content: 59.71

Gene sequence:

>1308_bases
ATGGACATGTCCACCGCCACCCTCGACGCCACATTCTGGATGACTGCGGGCGTCATTCTGTTTCTGCTCGTGCTCTCGGG
CTTCTTTTCCGGCTCCGAAACGGCCCTCACAGCCGCATCGCGCGGAAAGCTGCATTCGCTGTCCGACAAGGGCAACAAGG
GTGCCGAGCGGGCCTTGAAGATCACAGAAGACAACGAGCGCCTGATCGGTTCCGTACTGCTGGGCAACAATCTGGTGAAC
ATTCTCGCCGCCTCTCTGGCGACCTCCATCTTTACGCGCGCCTTTGGCGAAAGCGGTGTGGCCGTGGCCACGTTGGTCAT
GACCTTGCTCGTGCTGATCTTTGCCGAAGTGCTGCCCAAAACCTATGCGATCACCTATTCTGAAACCGTGGCCAGCGTCG
TGTCGCGCCCGATTTCGATTGTCGTGACCGTTTTTGCGCCCATTGTCGCGGCTGTCAGGCTGCTTGTGCGCGGTGTGCTG
CGCCTTTTCGGGGTCACCATTGATCCCGACAGCAATATCCTAGATGTACATGCTGAAATCGAGGGCGCGCTGACGCTGGG
TCATTCCGAGGGCGTTGTGGAAAAGGAGCACCGCGACCGCATTCTGGGCGCGCTTGATCTGAACGAACGCGCCGTGGAAG
AGATCATGCTGCATCGCTCCGGCATCGAGATGATCAACGCGGATGACGACCCGCAGGATATTCTGCACCAGTGCCTGCAA
TCCAACCACACCCGCCTCCCCGTATTTCAGGAACACCCCGAAAACATCATCGGCGTCATCCATGCCAAGGACCTGTTGCG
GGCCATGTACAAGATTATCGGCGGACCCGAGGGGGATGCCTCGAAACTGCGCAGCTTCAAACTGTCTGACGTGGCGATGA
AGCCCTATTTCGTGCCCGAAACCTCGACACTGGACGAGCAGATGCGCCAGTTCCTGCGCCGCCGGACGCATTTTGCGCTG
GTGGTCGACGAATACGGCTCACTGCAGGGTCTGATCACGCTGGAGGATATCCTCGAAGAGATCGTGGGCGAAATCACGGA
TGAGCACGACCCGACGGATATGGCACCGATCCAGCAGACCGAAGACGGCCAGTTCGTGATTGATGGCGCGATGACGATCC
GCGACCTGAACCGCGCCGCCGACTGGAATCTGCCGGATGACGAAGCCAACACCGTCGCCGGGCTAGTCATCCACGAGGCG
CAGATGATCCCGACCACCGGTCAGGTGTTCTCGTTCCACGGGTTCCGCTTCGAGGTCTGCGCGCGCGAGGGCAACCGTAT
TACGGAGCTCAAGATCCGCGCGCTTTGA

Upstream 100 bases:

>100_bases
GCAGACCCGCCCGGATGCGCAGGCATTGCGGGCGCCTCCCTTGATTGCGAGCACCATCGCCCCCATAACCAATGCACACT
TCTCAAAGGTATTCTCGAAA

Downstream 100 bases:

>100_bases
ACGGCGCGCGGGCGGCTGTTTCCAAGACGCGACGCGCGCGCCACGCATCACGCGCGCAGCCGCAACCCTTTTGGATCAAA
CGGGGGGTCAGCCAGAATGC

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MDMSTATLDATFWMTAGVILFLLVLSGFFSGSETALTAASRGKLHSLSDKGNKGAERALKITEDNERLIGSVLLGNNLVN
ILAASLATSIFTRAFGESGVAVATLVMTLLVLIFAEVLPKTYAITYSETVASVVSRPISIVVTVFAPIVAAVRLLVRGVL
RLFGVTIDPDSNILDVHAEIEGALTLGHSEGVVEKEHRDRILGALDLNERAVEEIMLHRSGIEMINADDDPQDILHQCLQ
SNHTRLPVFQEHPENIIGVIHAKDLLRAMYKIIGGPEGDASKLRSFKLSDVAMKPYFVPETSTLDEQMRQFLRRRTHFAL
VVDEYGSLQGLITLEDILEEIVGEITDEHDPTDMAPIQQTEDGQFVIDGAMTIRDLNRAADWNLPDDEANTVAGLVIHEA
QMIPTTGQVFSFHGFRFEVCAREGNRITELKIRAL

Sequences:

>Translated_435_residues
MDMSTATLDATFWMTAGVILFLLVLSGFFSGSETALTAASRGKLHSLSDKGNKGAERALKITEDNERLIGSVLLGNNLVN
ILAASLATSIFTRAFGESGVAVATLVMTLLVLIFAEVLPKTYAITYSETVASVVSRPISIVVTVFAPIVAAVRLLVRGVL
RLFGVTIDPDSNILDVHAEIEGALTLGHSEGVVEKEHRDRILGALDLNERAVEEIMLHRSGIEMINADDDPQDILHQCLQ
SNHTRLPVFQEHPENIIGVIHAKDLLRAMYKIIGGPEGDASKLRSFKLSDVAMKPYFVPETSTLDEQMRQFLRRRTHFAL
VVDEYGSLQGLITLEDILEEIVGEITDEHDPTDMAPIQQTEDGQFVIDGAMTIRDLNRAADWNLPDDEANTVAGLVIHEA
QMIPTTGQVFSFHGFRFEVCAREGNRITELKIRAL
>Mature_435_residues
MDMSTATLDATFWMTAGVILFLLVLSGFFSGSETALTAASRGKLHSLSDKGNKGAERALKITEDNERLIGSVLLGNNLVN
ILAASLATSIFTRAFGESGVAVATLVMTLLVLIFAEVLPKTYAITYSETVASVVSRPISIVVTVFAPIVAAVRLLVRGVL
RLFGVTIDPDSNILDVHAEIEGALTLGHSEGVVEKEHRDRILGALDLNERAVEEIMLHRSGIEMINADDDPQDILHQCLQ
SNHTRLPVFQEHPENIIGVIHAKDLLRAMYKIIGGPEGDASKLRSFKLSDVAMKPYFVPETSTLDEQMRQFLRRRTHFAL
VVDEYGSLQGLITLEDILEEIVGEITDEHDPTDMAPIQQTEDGQFVIDGAMTIRDLNRAADWNLPDDEANTVAGLVIHEA
QMIPTTGQVFSFHGFRFEVCAREGNRITELKIRAL

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=390, Percent_Identity=23.5897435897436, Blast_Score=125, Evalue=9e-29,
Organism=Homo sapiens, GI40068053, Length=354, Percent_Identity=26.8361581920904, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI40068055, Length=354, Percent_Identity=26.8361581920904, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI94681046, Length=366, Percent_Identity=28.9617486338798, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI145693175, Length=407, Percent_Identity=34.8894348894349, Blast_Score=253, Evalue=1e-68,
Organism=Escherichia coli, GI1790664, Length=431, Percent_Identity=26.4501160092807, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786879, Length=242, Percent_Identity=30.5785123966942, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082033, Length=264, Percent_Identity=32.1969696969697, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788119, Length=260, Percent_Identity=28.4615384615385, Blast_Score=88, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71980512, Length=360, Percent_Identity=25.2777777777778, Blast_Score=79, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6324512, Length=347, Percent_Identity=26.2247838616715, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47755; Mature: 47755

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMSTATLDATFWMTAGVILFLLVLSGFFSGSETALTAASRGKLHSLSDKGNKGAERALK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCCCCCCCCCHHHEEE
ITEDNERLIGSVLLGNNLVNILAASLATSIFTRAFGESGVAVATLVMTLLVLIFAEVLPK
ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
TYAITYSETVASVVSRPISIVVTVFAPIVAAVRLLVRGVLRLFGVTIDPDSNILDVHAEI
CEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCEEEEEEEE
EGALTLGHSEGVVEKEHRDRILGALDLNERAVEEIMLHRSGIEMINADDDPQDILHQCLQ
CEEEEECCCCCCCCHHHHHHEEEECCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH
SNHTRLPVFQEHPENIIGVIHAKDLLRAMYKIIGGPEGDASKLRSFKLSDVAMKPYFVPE
CCCCCCCCHHCCCCHHEEHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHCCCCEECCC
TSTLDEQMRQFLRRRTHFALVVDEYGSLQGLITLEDILEEIVGEITDEHDPTDMAPIQQT
CCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCC
EDGQFVIDGAMTIRDLNRAADWNLPDDEANTVAGLVIHEAQMIPTTGQVFSFHGFRFEVC
CCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHEEECCEECCCCCCEEEECCEEEEEE
AREGNRITELKIRAL
ECCCCEEEEEEEEEC
>Mature Secondary Structure
MDMSTATLDATFWMTAGVILFLLVLSGFFSGSETALTAASRGKLHSLSDKGNKGAERALK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHCCCCCCCCCCCCCCCHHHEEE
ITEDNERLIGSVLLGNNLVNILAASLATSIFTRAFGESGVAVATLVMTLLVLIFAEVLPK
ECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
TYAITYSETVASVVSRPISIVVTVFAPIVAAVRLLVRGVLRLFGVTIDPDSNILDVHAEI
CEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCEEEEEEEE
EGALTLGHSEGVVEKEHRDRILGALDLNERAVEEIMLHRSGIEMINADDDPQDILHQCLQ
CEEEEECCCCCCCCHHHHHHEEEECCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHH
SNHTRLPVFQEHPENIIGVIHAKDLLRAMYKIIGGPEGDASKLRSFKLSDVAMKPYFVPE
CCCCCCCCHHCCCCHHEEHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHCCCCEECCC
TSTLDEQMRQFLRRRTHFALVVDEYGSLQGLITLEDILEEIVGEITDEHDPTDMAPIQQT
CCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCC
EDGQFVIDGAMTIRDLNRAADWNLPDDEANTVAGLVIHEAQMIPTTGQVFSFHGFRFEVC
CCCCEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHEEECCEECCCCCCEEEECCEEEEEE
AREGNRITELKIRAL
ECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]