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The map label for this gene is 110680279

Identifier: 110680279

GI number: 110680279

Start: 2963066

End: 2964604

Strand: Direct

Name: 110680279

Synonym: RD1_3090

Alternate gene names: NA

Gene position: 2963066-2964604 (Clockwise)

Preceding gene: 110680278

Following gene: 110680280

Centisome position: 71.69

GC content: 64.59

Gene sequence:

>1539_bases
ATGCCGAATAGATATCTCTCATACGCGCTCTTGGGATTATGCCTGTGCCCGCCTGCTTTGGCGCAGGATCAGCCGCTGTC
GGTCATTGACTGGGTCAAACGCAACCCTGACCAGCCGGCGATGACATCCGCCATCCCCCCTCAACGATTTGAACCCCCCG
TTTCACCCGGTGCGCATGTGCCGCCCGTCACTGTTGCGCCACTGGATCAAAAGGCGCGGCGCATTATCGGATTGGTGCCT
GCATCGGTGACGGGCCTGTCCGAAGACATCTGGTCGGGCAGCGATGCGCGCGCGTTGCAGGCACAGCTCACCGACATTCC
TGTTTTGCGACTGCCTGCCGCGCAGACCCTGCTCTACACGGTGCTTTTGACCGAAGCCAAAGGGCCCGGTGATGACACGG
CGGGTGAAGATCTGCTGACCCTTGCCCGCGTGGACGCATTGATGCGCTTCGGGGCACATGATGCCGCGTTGTCCTTGCTT
GATCAGGCCGGGATCACACGCGATGCGGCGCATTTCAGGGCCTATATGGATCTCGCGCTGCTGACGGGTCAGGAAGACAC
CGGCTGCGCCATCCTCAGCACAATGCCCCACCTTGCGCCCTCCCTGTCGCACCGCGTCTTTTGTGCTGCCCGGCAGGGGG
ATTGGCCCACGGCCGCCCTGCTCTTTGATACAGGCAACACGCTGACGGCGTTTTCCGATGCCGAGACCGTCGCTCTTGAG
AGGTTCCTGCACCCTGAGGCGTTTGAAGACGCGCCCCCCCTGCCGCGGCCCGCTGAGATAACACCGCTCTTGTTCCGGCT
GCATGAAGCCATCGGAGAGCCCTTGCCAACCGGCGCCTTGCCCCGCCCCTACGCCGTGGCCGACCTGCGTGATCTGGCGG
GCTGGAAGCCGCAGTTGGAAGCCGCTGAACGGCTGGCGGTCACGGGGGCGCTGTCGCCCAACCGCCTGCTCGGTCTTTAC
ACGGCACGTCAGGCGGCAGCCTCAGGCGGTGTCTGGGACCGTGTGCGCGCCGTGCAACGGTTTGAAACGGCGCTGCGCAC
CCGCTCGACCGATGCGATTTCGAAAAGCCTGCCGGTTGCGTGGAACGCCATGCAGGCGGTGGGTCTGGAGATGATCTTTG
CCGACCTGTTCGCGGATACGCTGACCCGGTATGAATTGGGCGGGCGGGCGCAGGAAATCGCGACCACCATGGCGCTTTTG
TCACCGGATTATGCGGCGGCGAAACTGCCCGGAGACACGGACCCGTTTCTGGTTGCATTGGCACGTGGAACGCCTGAAAC
CTCCGACAGTGCTGATCTGCGCCACAGCGCGATCAGCCGGGGCTTTGACCCTGCCAACGCCCGGCGCGACCTGACGCAGA
TGGCGCAGAACGGGCGGCGGGGCGAGGCGATACTGCGCGCCCTGATCCTGCTTGATGACGGGGCGGCGGGTGATCCGGTT
GCCCTGACGCAGGCGCTTGCGACTTTGCGGTCGTTCGGTCTTGAGGACACGGTGCGCCGCGCCGCCCTGCAGGTCCTGCT
GCTGGACAGATACAGCTGA

Upstream 100 bases:

>100_bases
ATCGGCTTTATTGCACTGGCGGGCTATACCTATATCGGTCCGTTTTTCGGCGCTGATTTTTCAGCCCCCTCCGAAGAAAC
ACGTGTGCCCGTGACATTGG

Downstream 100 bases:

>100_bases
TGGCGGCGCACGGTACGTGGATTTCCGCTTTCCTTGAGGCGCAGGCTGCGGAACTTGGCGCCGCGCGCAACACGCTTTTG
GCCTATGGTCGTGACCTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MPNRYLSYALLGLCLCPPALAQDQPLSVIDWVKRNPDQPAMTSAIPPQRFEPPVSPGAHVPPVTVAPLDQKARRIIGLVP
ASVTGLSEDIWSGSDARALQAQLTDIPVLRLPAAQTLLYTVLLTEAKGPGDDTAGEDLLTLARVDALMRFGAHDAALSLL
DQAGITRDAAHFRAYMDLALLTGQEDTGCAILSTMPHLAPSLSHRVFCAARQGDWPTAALLFDTGNTLTAFSDAETVALE
RFLHPEAFEDAPPLPRPAEITPLLFRLHEAIGEPLPTGALPRPYAVADLRDLAGWKPQLEAAERLAVTGALSPNRLLGLY
TARQAAASGGVWDRVRAVQRFETALRTRSTDAISKSLPVAWNAMQAVGLEMIFADLFADTLTRYELGGRAQEIATTMALL
SPDYAAAKLPGDTDPFLVALARGTPETSDSADLRHSAISRGFDPANARRDLTQMAQNGRRGEAILRALILLDDGAAGDPV
ALTQALATLRSFGLEDTVRRAALQVLLLDRYS

Sequences:

>Translated_512_residues
MPNRYLSYALLGLCLCPPALAQDQPLSVIDWVKRNPDQPAMTSAIPPQRFEPPVSPGAHVPPVTVAPLDQKARRIIGLVP
ASVTGLSEDIWSGSDARALQAQLTDIPVLRLPAAQTLLYTVLLTEAKGPGDDTAGEDLLTLARVDALMRFGAHDAALSLL
DQAGITRDAAHFRAYMDLALLTGQEDTGCAILSTMPHLAPSLSHRVFCAARQGDWPTAALLFDTGNTLTAFSDAETVALE
RFLHPEAFEDAPPLPRPAEITPLLFRLHEAIGEPLPTGALPRPYAVADLRDLAGWKPQLEAAERLAVTGALSPNRLLGLY
TARQAAASGGVWDRVRAVQRFETALRTRSTDAISKSLPVAWNAMQAVGLEMIFADLFADTLTRYELGGRAQEIATTMALL
SPDYAAAKLPGDTDPFLVALARGTPETSDSADLRHSAISRGFDPANARRDLTQMAQNGRRGEAILRALILLDDGAAGDPV
ALTQALATLRSFGLEDTVRRAALQVLLLDRYS
>Mature_511_residues
PNRYLSYALLGLCLCPPALAQDQPLSVIDWVKRNPDQPAMTSAIPPQRFEPPVSPGAHVPPVTVAPLDQKARRIIGLVPA
SVTGLSEDIWSGSDARALQAQLTDIPVLRLPAAQTLLYTVLLTEAKGPGDDTAGEDLLTLARVDALMRFGAHDAALSLLD
QAGITRDAAHFRAYMDLALLTGQEDTGCAILSTMPHLAPSLSHRVFCAARQGDWPTAALLFDTGNTLTAFSDAETVALER
FLHPEAFEDAPPLPRPAEITPLLFRLHEAIGEPLPTGALPRPYAVADLRDLAGWKPQLEAAERLAVTGALSPNRLLGLYT
ARQAAASGGVWDRVRAVQRFETALRTRSTDAISKSLPVAWNAMQAVGLEMIFADLFADTLTRYELGGRAQEIATTMALLS
PDYAAAKLPGDTDPFLVALARGTPETSDSADLRHSAISRGFDPANARRDLTQMAQNGRRGEAILRALILLDDGAAGDPVA
LTQALATLRSFGLEDTVRRAALQVLLLDRYS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54926; Mature: 54795

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRYLSYALLGLCLCPPALAQDQPLSVIDWVKRNPDQPAMTSAIPPQRFEPPVSPGAHV
CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCC
PPVTVAPLDQKARRIIGLVPASVTGLSEDIWSGSDARALQAQLTDIPVLRLPAAQTLLYT
CCCEECCCCHHHHHHHHHCCCHHHCCHHHHCCCCCHHHHHHHHCCCCEEECCHHHHHHHH
VLLTEAKGPGDDTAGEDLLTLARVDALMRFGAHDAALSLLDQAGITRDAAHFRAYMDLAL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTGQEDTGCAILSTMPHLAPSLSHRVFCAARQGDWPTAALLFDTGNTLTAFSDAETVALE
EECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCEEEEECCHHHHHHH
RFLHPEAFEDAPPLPRPAEITPLLFRLHEAIGEPLPTGALPRPYAVADLRDLAGWKPQLE
HHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHH
AAERLAVTGALSPNRLLGLYTARQAAASGGVWDRVRAVQRFETALRTRSTDAISKSLPVA
HHHHHHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHH
WNAMQAVGLEMIFADLFADTLTRYELGGRAQEIATTMALLSPDYAAAKLPGDTDPFLVAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEE
ARGTPETSDSADLRHSAISRGFDPANARRDLTQMAQNGRRGEAILRALILLDDGAAGDPV
ECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHH
ALTQALATLRSFGLEDTVRRAALQVLLLDRYS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PNRYLSYALLGLCLCPPALAQDQPLSVIDWVKRNPDQPAMTSAIPPQRFEPPVSPGAHV
CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCC
PPVTVAPLDQKARRIIGLVPASVTGLSEDIWSGSDARALQAQLTDIPVLRLPAAQTLLYT
CCCEECCCCHHHHHHHHHCCCHHHCCHHHHCCCCCHHHHHHHHCCCCEEECCHHHHHHHH
VLLTEAKGPGDDTAGEDLLTLARVDALMRFGAHDAALSLLDQAGITRDAAHFRAYMDLAL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTGQEDTGCAILSTMPHLAPSLSHRVFCAARQGDWPTAALLFDTGNTLTAFSDAETVALE
EECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCEEEEECCHHHHHHH
RFLHPEAFEDAPPLPRPAEITPLLFRLHEAIGEPLPTGALPRPYAVADLRDLAGWKPQLE
HHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHH
AAERLAVTGALSPNRLLGLYTARQAAASGGVWDRVRAVQRFETALRTRSTDAISKSLPVA
HHHHHHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHH
WNAMQAVGLEMIFADLFADTLTRYELGGRAQEIATTMALLSPDYAAAKLPGDTDPFLVAL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEE
ARGTPETSDSADLRHSAISRGFDPANARRDLTQMAQNGRRGEAILRALILLDDGAAGDPV
ECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHH
ALTQALATLRSFGLEDTVRRAALQVLLLDRYS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA