| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is cyp [H]
Identifier: 110680161
GI number: 110680161
Start: 2839430
End: 2840647
Strand: Direct
Name: cyp [H]
Synonym: RD1_2962
Alternate gene names: 110680161
Gene position: 2839430-2840647 (Clockwise)
Preceding gene: 110680160
Following gene: 110680163
Centisome position: 68.7
GC content: 61.58
Gene sequence:
>1218_bases ATGCCTCTACTTTCTCAAGCGGACTTAAAGGCGGCCATGCAACGACTTATCCAATCCCCGCTGGACCCGGCTTTCGTGCA AAACCCCTATGCATTTTACGCTGAGGTTTTTACCGGCGACACCATTCGCTACTGGCAAGACTACGACATGCCCGCAATTT TTGATGCCGCCAACGTACAGGCGGTCCTGCGCAATCGTCGCTTCGGGCGCGCACTGCCGGCGGATCGGATCGGTCCACCG CGCCCCCACCTCGCCGCCTTTGATGCCGTCGAAGCAGTCTCCATGCTTGATCTGGAGCCGCCTGATCACACCCGGTTGCG CGGCCTGGTGCTGCGCGCCTTTACCTCGCGCCGAATCAAGGCGCTGGCGCCTGACATTCACGACATCTGCGACCGGCTGA TCGCGGACCTGCCAAAGGGCGGGTGCAACCTGATCCCCGCATTTTGCACGGCACTCCCGGTGCGCATCATTGCCCGGCTG CTGGGTGTGCCTGCGGAACGCTGCGGTGATCTGTTGCGCTGGTCCAATGCAATGGTGGCGATGTATCAGGCCGGGCGTAC GCTCGAGATCGAACACGCCGCCAACGCGGCCGCAAGCGAGTTCACTGCCTTCCTGTCTGATTACATCGACATCAAACGGC GCGCCCCGCAGGACGACCTGATCAGCCACCTGCTGCTGGCCGAGGAAAACGGCCAAAAACTCACCCGGCAAGAGTTGATC GGCACCTGTATCCTGCTGCTCAATGCCGGGCACGAGGCGACGGTGCACACAATGGGCAACGCGGTCAAAGCGCTGCTGGA ACATCAAACGCCGCCACAGGCCTTCACCGATCAGAATATCGCCGCAACAGTCGAAGAGGTGCTCAGGTTCGACCCGCCGT TGCACATGTTCACCCGCTACAGTTACGAGGACACCGAAATCGGCGACCACACGATCCGCAGCGGTCAGCAGGTCGCCTTG ATGCTCGGTGCCGCTGGCCGTGATCCGGCCCTATGCAAGGATCCGGACGTTTTTGATCCGTTTCGCGCACCCGTCCCACA TGCCGCTTTTGGCGGTGGGTTGCATTTTTGCGTCGGCGCGCCACTCGCCCGGCTTGAGTTGCAAATCGGCTTGCAAAGGC TCTTTGCCGCCCGCCCGAACCTCACCCTCAGCAGCCCGCCTCGATTTGCCAATGCGTACCACTTTCACGGCCTCGAACGC CTCGACGTCACCACCTGA
Upstream 100 bases:
>100_bases ACCGCGCAGGATTTCTCTCCCATCATCGAAGCACTGTCCGACAGTTGATGGCGCGGCATGTATGGGCGCCAACGCCCTGT GATACATGCGCCGCGCGCCC
Downstream 100 bases:
>100_bases CCCGACCCATCGCGCCTGAAGGGCTCAGGGTGCAACAAATCCCAAGCATGGAATGCGGCGCAGCCGCGCATTTGGATCAC GCGAGAGCGTCATGCGAAAA
Product: cytochrome P450, putative
Products: ROH; oxidized flavoprotein; H2O
Alternate protein names: NA
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MPLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQAVLRNRRFGRALPADRIGPP RPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIKALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARL LGVPAERCGDLLRWSNAMVAMYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRYSYEDTEIGDHTIRSGQQVAL MLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGAPLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLER LDVTT
Sequences:
>Translated_405_residues MPLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQAVLRNRRFGRALPADRIGPP RPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIKALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARL LGVPAERCGDLLRWSNAMVAMYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRYSYEDTEIGDHTIRSGQQVAL MLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGAPLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLER LDVTT >Mature_404_residues PLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQAVLRNRRFGRALPADRIGPPR PHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIKALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARLL GVPAERCGDLLRWSNAMVAMYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELIG TCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRYSYEDTEIGDHTIRSGQQVALM LGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGAPLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLERL DVTT
Specific function: Involved in the metabolism of the antibiotic polyketide bacillaene which is involved in secondary metabolism. The substrate is dihydrobacillaene [H]
COG id: COG2124
COG function: function code Q; Cytochrome P450
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome P450 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001128 - InterPro: IPR002397 - InterPro: IPR017972 [H]
Pfam domain/function: PF00067 p450 [H]
EC number: 1.14.14.1
Molecular weight: Translated: 44735; Mature: 44604
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00086 CYTOCHROME_P450
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQ CCCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCEEEECCCCCCCHHCCHHHHH AVLRNRRFGRALPADRIGPPRPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIK HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH ALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARLLGVPAERCGDLLRWSNAMVA HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH MYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRY HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHCC SYEDTEIGDHTIRSGQQVALMLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGA CCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCC PLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLERLDVTT CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure PLLSQADLKAAMQRLIQSPLDPAFVQNPYAFYAEVFTGDTIRYWQDYDMPAIFDAANVQ CCCCHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCEEEECCCCCCCHHCCHHHHH AVLRNRRFGRALPADRIGPPRPHLAAFDAVEAVSMLDLEPPDHTRLRGLVLRAFTSRRIK HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH ALAPDIHDICDRLIADLPKGGCNLIPAFCTALPVRIIARLLGVPAERCGDLLRWSNAMVA HHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH MYQAGRTLEIEHAANAAASEFTAFLSDYIDIKRRAPQDDLISHLLLAEENGQKLTRQELI HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH GTCILLLNAGHEATVHTMGNAVKALLEHQTPPQAFTDQNIAATVEEVLRFDPPLHMFTRY HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHCCCCHHHHHCC SYEDTEIGDHTIRSGQQVALMLGAAGRDPALCKDPDVFDPFRAPVPHAAFGGGLHFCVGA CCCCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCC PLARLELQIGLQRLFAARPNLTLSSPPRFANAYHFHGLERLDVTT CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: RH; reduced flavoprotein; O2
Specific reaction: RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]