| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679970
Identifier: 110679970
GI number: 110679970
Start: 2631348
End: 2632385
Strand: Direct
Name: 110679970
Synonym: RD1_2759
Alternate gene names: NA
Gene position: 2631348-2632385 (Clockwise)
Preceding gene: 110679969
Following gene: 110679976
Centisome position: 63.67
GC content: 59.73
Gene sequence:
>1038_bases ATGAATGCACTGATTCCCGAAACAGGCCCCGACCTTACCCCCATCAAAGCCGTCTCTCAGGCCTACGCGGCGTCACTGGA CCGTGCGACGCCCGACACGGTGGCCGATGTTCTGACGGCCTATCAATCGGACAGGTGCCACTGGTTCGGCATGCACCCCT TTCACGAACAAACCGGGCCGCGTGATATCGCCAGGACCTTTTGGGCACCGTTCCTGACGTCCTTTTCGCGCCTGCAACGG CGCGAGGACATCTTTTTTGCCGGGCTGAACGAAATCGACGGCTTCAAGAGCACCTGGACCGCCTCCATGGGTCATTTTCT GGGGCTGTTCGATGCACCGTTTCTGGGCATTCCGGCCACGGGCAAGATCGCCATGCTGCGCTATGCGGAGTTCAACCGGG TTGAAAACGGCAAGATCACGCAATCCGCGCTCTTTGTGGATATTTTGCATCTGATGGCGCAAGCGGGAATACATCCGCTG AATGCGCCGCAAACGGGCGCGCAACTGGTGCAGCCCGGCCCCCGCACGCATGACGGCCTGGTGATGAAACCACAGCCCCA TGCGGAATCGCAGAAAACGCTGGCGCGGATCAACAATATGATCGGCTCGATAGATCATGCCAATGCCGCCGCAAAGCCCC CCTCACCGCAGGAAGAACTGCGCGTGGATTGGCAGGATGACATGGTCTGGTGGGGGCCAACCGGGATCGGCGCGACCTAC ACGATTGACCGCTACATAAAGCAGCACCAAGGCCCCTTTCGCCGCGCGATGGAGGGGCGTGTGCTGAACGGCCATCTGTG CCGCATGGCCGAGGGGACATACGGCGGCTTTTTTGGCTGGCCAAACCTCACGCTGACCAACAGGAACGGTTTCATGGGCG TGCCCGGCAACGACATCCGCGCCGATATGCGCGTGGTCGATATCTACCGGCGCGAGGGCGACAAGCTGGTTGAGAACTGG GTCTTTATCGACATGCTGCATTTTCTCAAGATGCAAGGTGTCGATGTTCTGGCGCAGATCAACGTCCATAGCGTCTGA
Upstream 100 bases:
>100_bases TCCGCGACCGCAGCGGCATGTGGCAGATTGTCGAAACCGCGCCATAGCTTTTGTCGCTTTTGGTATGGCGAGTGCCTCGC GCTCTTTCTAAACCAATCAT
Downstream 100 bases:
>100_bases CGAAACACATGAAACATCACGTAACGCGTTGAAATCATTGATTTCAGGCAGCGTTGCGTACTTCAGGTTTTTCGCATGAC GCTTTAGCCCACCGCCTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGPRDIARTFWAPFLTSFSRLQR REDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPATGKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPL NAPQTGAQLVQPGPRTHDGLVMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIRADMRVVDIYRREGDKLVENW VFIDMLHFLKMQGVDVLAQINVHSV
Sequences:
>Translated_345_residues MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGPRDIARTFWAPFLTSFSRLQR REDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPATGKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPL NAPQTGAQLVQPGPRTHDGLVMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIRADMRVVDIYRREGDKLVENW VFIDMLHFLKMQGVDVLAQINVHSV >Mature_345_residues MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGPRDIARTFWAPFLTSFSRLQR REDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPATGKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPL NAPQTGAQLVQPGPRTHDGLVMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIRADMRVVDIYRREGDKLVENW VFIDMLHFLKMQGVDVLAQINVHSV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38584; Mature: 38584
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGP CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCHHHCCCH RDIARTFWAPFLTSFSRLQRREDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPAT HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC GKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPLNAPQTGAQLVQPGPRTHDGL CCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCE VMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCHH TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIR HHHHHHHHCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCEEEECCCCEECCCCCCHH ADMRVVDIYRREGDKLVENWVFIDMLHFLKMQGVDVLAQINVHSV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC >Mature Secondary Structure MNALIPETGPDLTPIKAVSQAYAASLDRATPDTVADVLTAYQSDRCHWFGMHPFHEQTGP CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCHHHCCCH RDIARTFWAPFLTSFSRLQRREDIFFAGLNEIDGFKSTWTASMGHFLGLFDAPFLGIPAT HHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC GKIAMLRYAEFNRVENGKITQSALFVDILHLMAQAGIHPLNAPQTGAQLVQPGPRTHDGL CCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCE VMKPQPHAESQKTLARINNMIGSIDHANAAAKPPSPQEELRVDWQDDMVWWGPTGIGATY EECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCHH TIDRYIKQHQGPFRRAMEGRVLNGHLCRMAEGTYGGFFGWPNLTLTNRNGFMGVPGNDIR HHHHHHHHCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCEEEECCCCEECCCCCCHH ADMRVVDIYRREGDKLVENWVFIDMLHFLKMQGVDVLAQINVHSV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA